Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00218 ATGTCACATCTTCTCAACTGCAAGATAAAGATTATTCTTCATGCTGTCACTTGCAACAAGACTTCCAGATATATGCCAATTAATCCTAAAGTCAGCTCAAGGTGCATAAGCAAAGCTGATCTATTAGATAAAAAGTGGTCAAAGATTGGTCAAGAAGCTGTCTTATCCATTGATTTAAAGAAATCTGGTAAAGCTTCAAATACTTCAAAGAAGATGGGGCTGTGCTCTCAGTCTCAAGCTGCCCATAAAAACTTGGTGCTAGTTTCTACCTTCCAAATTATGACTCCAGTTACATTTTTAACTGTAAACAAGATAGCTGCTCAAAGGAGACATCGTGTTGAAGATGAACTAAGCTCACAGACTAAAGCTGGTTTGAGAATGTTGTTTGCACTCGATGAACAAAGAGTAGCTCAAGCTTTTACTTCCCCTGAGTACTTTATGCAGGGTAACAAACATAAAAAACTTGTCAAGCAAGCCAAACACTCGAGGCGAAAAATGGAGGGAAAGAGGAAGAGATGGGAATCAGAGTCAGAGCGCGTGATCCTACTCGCAAAAATCAAAGAATTCACTCGAGCTTTACTGGTAGACCTCGTCAATGAACGCTCACCGCTCATTCTCATCGATCGCTTTAGAAATTACTGCACCGTTACCAACTCTAATTGCTTTTGTGGCTCCGATTTGCCATGTGGAAAGGAAGTTCTTACGCTTTGCAAGGAAACCCATGTACACAGACTAGATGTCATGTTGAGAGTGTTATTGATTATTCAGAGACTTTTGCAAGAGAACAAGCATAGTTCCAAGAGAGACATTTATTATATGCATCCATCTGTGTTTTTGGATCAGTCAGTTGTGGACCATGCAATTAATGATATATGTGTCCTTATGCAGTGCAGTCGCCATAACCTTCATGTGGTTTCTGCCGGGAATGGGTTAGTTATGGGCTGGATAAGATTCTTTGAAGGCAAAAAAATATTTGACTGCATCAGTTCTCCCAACACTGCCCACCCTGTTCCTGTTCATGTTGAAGATGTTAAAGATATCGTTAGTGTTGCTCATTACATATTAGTTGTTGAGAAAGAATCAGTTTTCCAGAGATTAGCAAACGACCAGTTCTGCAATGCAAATCATTGCATTGTAATCACTGGAAGAGGCTACCCAGATATTCCTACAAGAAGGTTTTTGCGGCTTCTGGTTGAGAATTTGCACCTGCCTGCTTATTGCTTGGTAGATTGTGATCCCTATGGCTTCGATATCTTAACCACTTACAGATTTGGTTCCATGCAAATGGCATATGACACGAAACATCTTCGTGTCCCAGAGATACATTGGCTTGGAGCTTTTCCTTCAGATTCTGAGAGATATTTTGTTCCAAAGCAGTGCCTCCTTCCTCTGACTGCTGAAGACAAGAAAAAAATTGAAGCCATGTTGCTTAGATGCTACCTGCAAAGGGAGGTGCCACAATGGAGGTTGGAGCTAGAGCTGATGCTGCAGAGAGGAGTAAAGTTTGAGATTGAAGCGTTGTCCGTGCATACACTTACATTCTTGACAGAGTCTTACATACCATCTAAAATTCAAGATTCGTACACCTCGCAAGGTGCCTTTAGAGATGGGCGTAACGCCAGAATCTTTAACCAGAAATTTCACTGTTCTCATAAGATTTGTATTCTAAAAGTAGATACCCAATGCGAGTCATGTAAAGCAAAGGTGATAAAGGTCTTACAGAAAATTCGTGGTGTCTATAATATCACAATTGATGGAGAACAAGGGACAGTGAAAGTTACAGGTAGAGTAAACCCAAGTGAATTATTGTATGTGCTTGATAAGTATGGGAAACATGCAGATGTGAAGTATATCAAGTTTGATGGTGAAGTTGTAGAAAGAAGAACTCATAATTATGGAGAATATGGACATGGTCCCTATGGTATGGAACCTTCATATCCTCCCCCATTGCCATGTTGCCAACAATATCATAGCTTTTATCCACCTCCACTACCTCCTCCTCCTCCTCCATACCTGGTTGCACCACCGCCTCCTCCTCCGCCAGCACCATTCTGGGCACCACCACCACCTGGTCCTTTTGGACCTCCTCCTTTGTCATATCTCTTGAGGCCACCCCCACCCGCCTCTAATGGAAAGACATCATCACAAAATAAAAAGGGAAAGCGTTGCATAATGATGTAG 2181 0.4154 MSHLLNCKIKIILHAVTCNKTSRYMPINPKVSSRCISKADLLDKKWSKIGQEAVLSIDLKKSGKASNTSKKMGLCSQSQAAHKNLVLVSTFQIMTPVTFLTVNKIAAQRRHRVEDELSSQTKAGLRMLFALDEQRVAQAFTSPEYFMQGNKHKKLVKQAKHSRRKMEGKRKRWESESERVILLAKIKEFTRALLVDLVNERSPLILIDRFRNYCTVTNSNCFCGSDLPCGKEVLTLCKETHVHRLDVMLRVLLIIQRLLQENKHSSKRDIYYMHPSVFLDQSVVDHAINDICVLMQCSRHNLHVVSAGNGLVMGWIRFFEGKKIFDCISSPNTAHPVPVHVEDVKDIVSVAHYILVVEKESVFQRLANDQFCNANHCIVITGRGYPDIPTRRFLRLLVENLHLPAYCLVDCDPYGFDILTTYRFGSMQMAYDTKHLRVPEIHWLGAFPSDSERYFVPKQCLLPLTAEDKKKIEAMLLRCYLQREVPQWRLELELMLQRGVKFEIEALSVHTLTFLTESYIPSKIQDSYTSQGAFRDGRNARIFNQKFHCSHKICILKVDTQCESCKAKVIKVLQKIRGVYNITIDGEQGTVKVTGRVNPSELLYVLDKYGKHADVKYIKFDGEVVERRTHNYGEYGHGPYGMEPSYPPPLPCCQQYHSFYPPPLPPPPPPYLVAPPPPPPPAPFWAPPPPGPFGPPPLSYLLRPPPPASNGKTSSQNKKGKRCIMM* 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00218 726 SUPERFAMILY HMA, heavy metal-associated domain 551 613 IPR036163 GO:0046872
Rops9g00218 726 CDD HMA 556 613 IPR006121 GO:0046872
Rops9g00218 726 MobiDBLite consensus disorder prediction 696 726 - -
Rops9g00218 726 FunFam DNA topoisomerase 6 subunit A 308 529 - -
Rops9g00218 726 Pfam Heavy-metal-associated domain 557 612 IPR006121 GO:0046872
Rops9g00218 726 Coils Coil 156 176 - -
Rops9g00218 726 ProSiteProfiles Heavy-metal-associated domain profile. 551 614 IPR006121 GO:0046872
Rops9g00218 726 PRINTS SPO11 homologue signature 273 293 IPR013048 GO:0003677|GO:0003918|GO:0042138
Rops9g00218 726 PRINTS SPO11 homologue signature 450 474 IPR013048 GO:0003677|GO:0003918|GO:0042138
Rops9g00218 726 PRINTS SPO11 homologue signature 415 434 IPR013048 GO:0003677|GO:0003918|GO:0042138
Rops9g00218 726 PRINTS SPO11 homologue signature 368 383 IPR013048 GO:0003677|GO:0003918|GO:0042138
Rops9g00218 726 Gene3D - 551 615 - -
Rops9g00218 726 PANTHER MEIOTIC RECOMBINATION PROTEIN SPO11 182 526 IPR002815 GO:0003677|GO:0003918|GO:0005694
Rops9g00218 726 CDD TOPRIM_TopoIIB_SPO 352 514 IPR034136 -
Rops9g00218 726 SUPERFAMILY DNA topoisomerase IV, alpha subunit 242 526 IPR036078 GO:0003677|GO:0005694
Rops9g00218 726 Gene3D - 309 529 - -
Rops9g00218 726 Pfam Type IIB DNA topoisomerase 244 304 IPR013049 GO:0003677|GO:0003824|GO:0005524|GO:0005694|GO:0006259
Rops9g00218 726 Gene3D - 168 307 IPR036388 -
Rops9g00218 726 PRINTS DNA topoisomerase VI subunit A family signature 410 426 IPR002815 GO:0003677|GO:0003918|GO:0005694
Rops9g00218 726 PRINTS DNA topoisomerase VI subunit A family signature 281 298 IPR002815 GO:0003677|GO:0003918|GO:0005694
Rops9g00218 726 PRINTS DNA topoisomerase VI subunit A family signature 267 278 IPR002815 GO:0003677|GO:0003918|GO:0005694
Rops9g00218 726 PRINTS DNA topoisomerase VI subunit A family signature 299 314 IPR002815 GO:0003677|GO:0003918|GO:0005694
Rops9g00218 726 PRINTS DNA topoisomerase VI subunit A family signature 354 371 IPR002815 GO:0003677|GO:0003918|GO:0005694
Rops9g00218 726 PRINTS DNA topoisomerase VI subunit A family signature 378 399 IPR002815 GO:0003677|GO:0003918|GO:0005694
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00218 Rops-Chr9 2747282 2752807 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00218 K10878 - gmx:100813920 625.165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g00218 9 2747282 2752807 Rops9g00218 9 2747282 2752807 ECH