Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00216 ATGGGGCCTGTTTCAGCAAGAAGCACAGGCGCAGTTGGTGTTGGTGTTGGAGCTGCAGCCATATTGTTGTCGATGGTGGTTTCCTATTTCATCTGCAACCGTCGCTGCAATTCTTCATCAAAGAAGAAATCAAACAAGGGAATCGTTGAAGCCATTGGTAACACCCCTTTGATTCGAATCAATAGCCTCTCCGACGCCACTGGTTGCCAAATTCTTGGCAAGTGCGAGTTTTTGAACCCCGGAGGCAGTGTCAAGGATCGCGTTGCTGTTAAAATTATTGAAGAGGCCTTGGAATCTGGGCAGCTACGAAAAGGTGGAATTGTTACTGAAGGGAGTGCTGGAAGCACTGCCATTAGCATTGCCACTGTTGCTCCTGCCTTTGGATGCAAATGCCACGTGGTTATTCCTGATGATGCTGCCATTGAAAAGTCTCAAATAATTGAAGCCCTTGGGGCAACTGTTGAAAGAGTACGGCCAGTGTCAATTACTCACAAAGACCATTTTGTCAATATGGCAAGGAGACGGGCTTCTGAAGCAAATGAGTTTGCATTGAAGCATAGAAATTCAGAAATGAATGGGAAGGACTCGGAGCAAATAAATGGTTATAAATCAGATGGATGCAATCACAGCTCACTCTTTCCTAATGATTGTCAAGGCGGCTTTTTTGCTGATCAGTTTGAGAATTTAGCAAACTTCAGGGCCCATTATGAGGGTACAGGGCCTGAGATTTGGGAGCAGACCAATGGAAAGTTAGATGCATTTGTTGCAGCAGCAGGTACTGGTGGTACTGTGGCTGGTGTTTCCAGGTTTCTTCAGGAAAAGAATCCAAACATCAGGTGCTTCCTCATAGATCCCCCTGGTTCTGGCTTGTTTAATAAGGTAACAAGGGGAGTGATGTACACCAAAGAGGAGGCAGAAGGAAAAAGACTTAAGAACCCATTTGACACTATAACAGAAGGGATTGGAATTAACAGGCTAACAAGGAATTTTGCAGAGGCAAAACTTGATGGGGCCTTTAGAGGCACAGATATGGAAGCTGTTGAAATGGCTAGGTTTCTCTTGAAGAATGATGGGCTGTTCCTTGGGAGTTCTTCTGCAATGAACTGTGTTGGAGCAGTTAGAGTAGCACAGACACTTGGCCCTGGTCACACAATTGTAACCATTCTCTGTGACAGTGGAATGAGACATTTGAGCAAGTTCTGTAATGCCGAATACTTGTCTCAGCTTGGTTTGACACCAAAAGCAACTGGATTAGAGTTCTTGGGCATTAAATGA 1275 0.4486 MGPVSARSTGAVGVGVGAAAILLSMVVSYFICNRRCNSSSKKKSNKGIVEAIGNTPLIRINSLSDATGCQILGKCEFLNPGGSVKDRVAVKIIEEALESGQLRKGGIVTEGSAGSTAISIATVAPAFGCKCHVVIPDDAAIEKSQIIEALGATVERVRPVSITHKDHFVNMARRRASEANEFALKHRNSEMNGKDSEQINGYKSDGCNHSSLFPNDCQGGFFADQFENLANFRAHYEGTGPEIWEQTNGKLDAFVAAAGTGGTVAGVSRFLQEKNPNIRCFLIDPPGSGLFNKVTRGVMYTKEEAEGKRLKNPFDTITEGIGINRLTRNFAEAKLDGAFRGTDMEAVEMARFLLKNDGLFLGSSSAMNCVGAVRVAQTLGPGHTIVTILCDSGMRHLSKFCNAEYLSQLGLTPKATGLEFLGIK* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00216 424 FunFam Cysteine synthase, putative 52 81 - -
Rops9g00216 424 Pfam Pyridoxal-phosphate dependent enzyme 50 391 IPR001926 -
Rops9g00216 424 CDD CBS_like 53 398 - -
Rops9g00216 424 ProSitePatterns Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 74 92 IPR001216 GO:0006535
Rops9g00216 424 Gene3D - 52 397 IPR036052 -
Rops9g00216 424 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 46 405 IPR036052 -
Rops9g00216 424 PANTHER CYSTATHIONINE BETA-SYNTHASE 46 405 - -
Rops9g00216 424 Gene3D - 82 232 IPR036052 -
Rops9g00216 424 FunFam Cysteine synthase 233 397 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00216 Rops-Chr9 2729083 2731545 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00216 50 398 Miscellaneous Gene Families AT3G04940 29.060 2.79e-33 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00216 K01738 - gmx:100799081 692.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g00216 9 2729083 2731545 Rops9g00216 9 2729083 2731545 ECH