Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00154 ATGACTGTTGGGGCAGGGATATCTGTTGCTGATGGAAACTTGATGGTGTTGGGGAAGAAGGTTCTGAGTCAGGTTCATGAAAATGTCGTTGTTACCCCTGCATCCGGGGGTGCTTTGCTTAATGGAGCATTCCTTGGTGTTGCTTCTCATCAAAAGGGTAGCCGCAGAGTCTTCCCTATTGGCAAACTTGAGGGGTTGAGATTTATGTGTGTTTTCCGCTTCAAGATGTGGTGGATGACACAGAGAATGGGGACTTGTGGGAAAGAAATCCCCATTGAGACTCAGTTCTTGCTTATTGAAGCACACAATGGTTCTGATATTGATGGAGGGGCCAACAATGAAGAAGACCAAGCTTCTGCTACCTATGCAGTTTTCTTACCTCTTCTTGAAGGAGATTTCAGGGCAGTTCTTCAAGGGAATGATCAAAACGAGATTGAGATCTGTGTGGAAAGTGGTTGTCCTTCTGTGGAGGAATTTGATGGGACTCATCTGGTGTTTATCGGGGCTGGATCAGATCCTTATGAAGTCATAACAAATGCTGTCAAGACTGTTGAGAAACACTTGAAGACATTTTCTCATCGCGAGAGAAAGAAGATGCCAGATATGTTGAACTGGTTTGGGTGGTGTACATGGGATGCTTTCTATACTAGTGTCACTTCAGAGAACGTGAAGCAAGGATTACAGAGTTTCGAGGAAGGTGGAATTCCTGCTAAGTTTGTTATAATTGATGATGGATGGCAATCTGTTGGCATGGATCCCAATGGTGTTGCATGGAAATCTGATAGTGCAGCCAACTTTGCAAATCGATTAACGCATATCAAAGAGAATCACAAGTTCCAGAAAGATGGCAAGGAAGGGGAGCGGGTAGAGGACCCAGCTATGGGACTTCGTCATATTACAGATGAGATCAAGCAAGAGCATGCCATAAAGTATGTGTATGTGTGGCATGCAATAACAGGATATTGGGGTGGTGTTAAACCTGGTGTTACTGGCATGGAGCACTATGAGTCAAAGATGACCTTCCCTGTCTCATCTCCTGGAGTTAAGTCCAATCAACCAGATGAAGCTTTAGATACCATTACCATCAATGGACTTGGCCTTGTGAATCCTGAGAAAGTTTTTCACTTTTATGATGAAATCCACTCATATCTGGCATCTGCTGGTATTGATGGTGTCAAAGTTGATGTTCAGAATATCCTTGAAACTTTAGGGGCAGGACATGGTGGGAGGGTTAAACTTGCAAGGAAATACCACCAGGCACTAGAGGCATCAATCTCTAGGAACTTCCCTGATAATGGAATCATTTGTTGCATGAGTCATAATACAGATGGATTGTACAGTGCAAAGCGTTCAGCTGTTATTAGAGCATCAGATGATTTCTGGCCAAGAGACCCTGCATCCCACACTATTCACATTGCATCAGTTGCTTACAATACTATTTTCCTTGGTGAATTTATGCAGCCAGATTGGGATATGTTTCATAGCCTACATCCAATGGCTGAATATCATGCTGCTGCACGAGCAGTTGGGGGATGTCCTATTTATGTCAGTGACAAGCCTGGACACCACGACTTTAATCTTTTGAAGAAGCTTGCACTTCCTGATGGTTCTATATTAAGGGCTAAACTTCCAGGAAGACCAACCAAAGATTGCTTATTTACTGATCCTGCAAGAGATGGAAAGAGTCTTCTGAAGATATGGAACATGAATGATTATTCTGGAGTTGTTGGGGTATTCAATTGCCAAGGAGCTGGGTGGTGCAAAGTTGGAAAGAAGAACCTCATCCATGATGAGAATCCAGGCACAGTCACTGGTTACATTAGGGCCAAAGATGTTGATTATATATCCAAGGTTGCAGATGATAAATGGACAGGAGATGCCATTATATATTCGCATGTTGGAGGAGAAGTTGTTTACCTTCCAAAGGATGCATCTATCCCAATTACCATGAAATCCCGAGAATATGAAGTTTATACAATAGTTCCCATGAAGGAATTAACAAATGGTGTCAAATTTGCTCCTATTGGTTTAATCAAAATGTTCAATTCAGGAGGGGCTGTCAAAGAGTTCAGTGTTGGATCTAATGGAAGTACTAATGTTACCATGAAAGTCCGGGGTTGTGGCCCCTTTGGTGCTTATTCTTCAGTTCGGCCCAAGTTGGTAACAGTTGATTCAGAAGAGATGGAATTCAAGTATGAGGAAGAATCAGGATTGGTGACTATTGATTTGAGAGTACCTGAGATAGAGTTATACCAATGGAGCATTTCCATTGATTTTTGA 2280 0.425 MTVGAGISVADGNLMVLGKKVLSQVHENVVVTPASGGALLNGAFLGVASHQKGSRRVFPIGKLEGLRFMCVFRFKMWWMTQRMGTCGKEIPIETQFLLIEAHNGSDIDGGANNEEDQASATYAVFLPLLEGDFRAVLQGNDQNEIEICVESGCPSVEEFDGTHLVFIGAGSDPYEVITNAVKTVEKHLKTFSHRERKKMPDMLNWFGWCTWDAFYTSVTSENVKQGLQSFEEGGIPAKFVIIDDGWQSVGMDPNGVAWKSDSAANFANRLTHIKENHKFQKDGKEGERVEDPAMGLRHITDEIKQEHAIKYVYVWHAITGYWGGVKPGVTGMEHYESKMTFPVSSPGVKSNQPDEALDTITINGLGLVNPEKVFHFYDEIHSYLASAGIDGVKVDVQNILETLGAGHGGRVKLARKYHQALEASISRNFPDNGIICCMSHNTDGLYSAKRSAVIRASDDFWPRDPASHTIHIASVAYNTIFLGEFMQPDWDMFHSLHPMAEYHAAARAVGGCPIYVSDKPGHHDFNLLKKLALPDGSILRAKLPGRPTKDCLFTDPARDGKSLLKIWNMNDYSGVVGVFNCQGAGWCKVGKKNLIHDENPGTVTGYIRAKDVDYISKVADDKWTGDAIIYSHVGGEVVYLPKDASIPITMKSREYEVYTIVPMKELTNGVKFAPIGLIKMFNSGGAVKEFSVGSNGSTNVTMKVRGCGPFGAYSSVRPKLVTVDSEEMEFKYEEESGLVTIDLRVPEIELYQWSISIDF* 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00154 759 Pfam Raffinose synthase or seed imbibition protein Sip1 7 742 IPR008811 -
Rops9g00154 759 PANTHER - 1 755 IPR008811 -
Rops9g00154 759 Gene3D Aldolase class I 201 532 IPR013785 -
Rops9g00154 759 FunFam Probable galactinol--sucrose galactosyltransferase 1 203 530 - -
Rops9g00154 759 SUPERFAMILY (Trans)glycosidases 200 531 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00154 Rops-Chr9 1868085 1872622 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00154 1 757 Glycoside Hydrolase AT1G55740 72.596 0.0 1135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00154 K06617 - gmx:100785506 1430.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g00154 9 1868085 1872622 Rops9g00154 9 1868085 1872622 ECH