Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00060 ATGTCTGCCAACGACCAAATAGACGGTGAAAACATTGAATTATTTAGTGTTGTTGAGGACAAGCATGGAGGAGTTATTCTAACCGTGGAGGAGCCTATGCATTCTATGCTCTTCTCTTCTATATTGGAATCCTCAATGTCAAATTGGAGGCAACAGGCAAAGAAGGGGATCTGGATCAAGTTGCCCATACAACATTCAAATCTTGTTGATTCTGCTGTGAAGGCTGGATTTAGGTACCACCATGCAGAGCCAGATTACTTGATGCTTGTATATTGGATCCCTGATACCCCTGATAACCTTCCTGCAAATGCTTCCCATCGCGTGGGTATTGGTGCTTTTGTCATCAACAACAAGAAGGAGGTGCTTGTGGTTCAGGAAACTAATGGTAGATTTAGAGGCACAGGTGTATGGAAGCTGCCTACAGGATCTGTTAATGAAGGTGAGGATATTTGTAATGCTGCAATTAGAGAAGTCAAAGAAGAGACGGGGGTAGAGACAACGTTTGTTGAAGTTTTAGCATTCAGGCAAAGCCACATGTCTTTCTTCCAGAAATCGGATTTGTTATTTGTTTGCATGTTGCAACCAAAATCCTTTGACATTCAGAGTCAGGCTTCAGAAATTGAGGCAGCTCAGTGGATGCCAATTGAAGATTATGCAGCCCAGCCATTTGTGCAAGAAAATGAGCTCTTTGACTTCACTGCAAAAATATGCTTATCAAAGTTGGATGGCAACTACACTGGTTTCTCTAACTATCTTACATGTACATCGTCTGGTAAAAAAACCTATCTGTACTTCAACCATCGTGATGCTAGCCACTTGTTAGCTTCCAACCACGAGCAGGCTTAA 846 0.422 MSANDQIDGENIELFSVVEDKHGGVILTVEEPMHSMLFSSILESSMSNWRQQAKKGIWIKLPIQHSNLVDSAVKAGFRYHHAEPDYLMLVYWIPDTPDNLPANASHRVGIGAFVINNKKEVLVVQETNGRFRGTGVWKLPTGSVNEGEDICNAAIREVKEETGVETTFVEVLAFRQSHMSFFQKSDLLFVCMLQPKSFDIQSQASEIEAAQWMPIEDYAAQPFVQENELFDFTAKICLSKLDGNYTGFSNYLTCTSSGKKTYLYFNHRDASHLLASNHEQA* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00060 281 FunFam nudix hydrolase 2 12 98 - -
Rops9g00060 281 Gene3D - 13 98 - -
Rops9g00060 281 Pfam Nudix hydrolase domain 15 93 IPR040618 -
Rops9g00060 281 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 107 236 - -
Rops9g00060 281 ProSiteProfiles Nudix hydrolase domain profile. 105 237 IPR000086 -
Rops9g00060 281 SUPERFAMILY Nudix 74 227 IPR015797 -
Rops9g00060 281 Pfam NUDIX domain 106 226 IPR000086 -
Rops9g00060 281 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 191 215 IPR003293 -
Rops9g00060 281 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 87 103 IPR003293 -
Rops9g00060 281 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 103 121 IPR003293 -
Rops9g00060 281 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 65 83 IPR003293 -
Rops9g00060 281 FunFam Nudix hydrolase 8 107 245 - -
Rops9g00060 281 ProSitePatterns Nudix box signature. 142 163 IPR020084 GO:0016787
Rops9g00060 281 PANTHER NUDIX HYDROLASE RELATED 7 270 IPR003293 -
Rops9g00060 281 CDD Nudix_Hydrolase_12 106 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00060 Rops-Chr9 820807 824228 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00060 K26956 - gmx:100818821 455.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g00060 9 820807 824228 Rops9g00060 9 820807 824228 ECH