Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g04275 ATGGAAAGAAACCAAACCCTAAAAGAAACCACTATGGAAGCAGAGTTCGAGGACTTGTTGCCTGTGATGGCAGAGAAGCTTGATGTGGAGGCCTTTGTGTCTGAATTGTGTGGGGGTTTCAAGCTTCTAGCTGACCCAGAAATTGGTTTGATCACAAGTGAGAGTCTGATGAGGAATTCAGCTCTGCTGGGTATGGATGGAATGAGCAAAGAGGATGCAGAGGCCATGGTTAGACATGGTGATCTTGATGGGGATGGGAAGCTAAATGAGACTGAGTTTTGCATCCTTATGGTGAGGCTTAGCCCTGGGATGATGGAAGATGCTGAGGCATGGCTTGACAAGGCAATTGGACAAGAGCTCAAGAAACCCTCAACTTAA 378 0.4683 MERNQTLKETTMEAEFEDLLPVMAEKLDVEAFVSELCGGFKLLADPEIGLITSESLMRNSALLGMDGMSKEDAEAMVRHGDLDGDGKLNETEFCILMVRLSPGMMEDAEAWLDKAIGQELKKPST* 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g04275 125 Gene3D - 13 124 - -
Rops8g04275 125 ProSiteProfiles EF-hand calcium-binding domain profile. 68 103 IPR002048 GO:0005509
Rops8g04275 125 ProSitePatterns EF-hand calcium-binding domain. 81 93 IPR018247 -
Rops8g04275 125 Pfam EF-hand domain pair 49 99 IPR002048 GO:0005509
Rops8g04275 125 SUPERFAMILY EF-hand 30 108 IPR011992 -
Rops8g04275 125 PANTHER CALCIUM-BINDING PROTEIN KIC 13 122 IPR044205 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g04275 Rops-Chr8 85558126 85558741 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g04275 5 120 EF-hand Containing Proteins AT2G46600 72.414 2.27e-58 175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g04275 K24345 - gmx:100801586 209.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g04275 8 85558126 85558741 Rops4g01660 4 40085261 40085869 PCT