LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops8g03911	ATGTTTTTGGTGGATTGGTTTTATGGGATTCTAGCATCGCTTGGGCTGTGGCAGAAGGAGGCCAAGATCTTATTCTTAGGGCTCGATAACGCTGGCAAAACCACCTTGCTTCATATGCTTAAAGATGAGAGACTTGTGCAGCATCAGCCAACACAGTACCCAACATCAGAGGAGTTGAGTATTGGGAAGATCAAGTTTAAAGCTTTTGATCTGGGGGGTCATCAGATTGCTCGTAGAGTCTGGAAAGATTACTATGCCCAGGTAGATGCAGTGGTCTACTTGGTTGATGCTTATGACAAGGAAAGATTTGCTGAATCAAAAAAAGAGCTGGATGCTCTACTGTCTGATGAATCTTTGGCCAATGTCCCTTTCCTAATCCTTGGAAACAAAATAGATATTCCATATGCTGCCTCAGAAGAAGAGTTGCGTTACCATTTGGGCCTGAGCAACTTCACCACTGGCAAGGGTAAGGTAAATTTGGCTGACTCAAATGTCCGCCCCATGGAGGTATTCATGTGCAGTATTGTGAAGAAAATGGGTTATGGGGATGGTTTCAAATGGCTTTCTCAGTACATCAAATAG	582	0.4364	MFLVDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAQVDAVVYLVDAYDKERFAESKKELDALLSDESLANVPFLILGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPMEVFMCSIVKKMGYGDGFKWLSQYIK*	194

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops8g03911	193	ProSiteProfiles	small GTPase SAR1 family profile.	14	192	-	-
	Rops8g03911	193	PANTHER	RE74312P	1	193	IPR006687	GO:0005525\|GO:0006886
	Rops8g03911	193	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	17	192	IPR027417	-
	Rops8g03911	193	CDD	Sar1	2	192	-	-
	Rops8g03911	193	Gene3D	-	1	193	IPR027417	-
	Rops8g03911	193	ProSiteProfiles	small GTPase Arf family profile.	14	192	-	-
	Rops8g03911	193	SMART	arf_sub_2	4	193	-	-
	Rops8g03911	193	SMART	sar_sub_1	4	192	IPR006689	GO:0003924\|GO:0005525
	Rops8g03911	193	NCBIfam	small GTP-binding protein domain	19	138	IPR005225	GO:0005525
	Rops8g03911	193	FunFam	GTP-binding protein SAR1A	1	193	-	-
	Rops8g03911	193	Pfam	ADP-ribosylation factor family	8	192	IPR006689	GO:0003924\|GO:0005525
	Rops8g03911	193	PRINTS	GTP-binding SAR1 protein signature	122	143	IPR006689	GO:0003924\|GO:0005525
	Rops8g03911	193	PRINTS	GTP-binding SAR1 protein signature	77	102	IPR006689	GO:0003924\|GO:0005525
	Rops8g03911	193	PRINTS	GTP-binding SAR1 protein signature	22	45	IPR006689	GO:0003924\|GO:0005525
	Rops8g03911	193	PRINTS	GTP-binding SAR1 protein signature	50	74	IPR006689	GO:0003924\|GO:0005525
	Rops8g03911	193	PRINTS	GTP-binding SAR1 protein signature	166	190	IPR006689	GO:0003924\|GO:0005525

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops8g03911	Rops-Chr8	80127117	80129421	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops8g03911	19	162	Miscellaneous Gene Families	AT5G05670	27.500	8.06e-06	43.1

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops8g03911	K07953		-	cit:102626272	372.089

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Rops2g04951	2	89062399	89064907	Rops8g03911	8	80127117	80129421	ECH
	Rops11g01483	11	22388830	22391181	Rops8g03911	8	80127117	80129421	ECH
	Rops8g03911	8	80127117	80129421	Rops8g03911	8	80127117	80129421	ECH