Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03909 ATGTCCTATTTTCTTCGAAGATCGCTTAGGAGGATCACATTCTCGCTCGTGGGAAACTCGTCTAAGTCGCATCACATTCCAGCTTCATCAACCTGGTTTTCGTGTCGCCAATTGTCACACTCCCTTCCTCACAATACTAGTCCTTGGTTCACTTCAAATTCCCTTTTTCCAAGGGGCAGTAGTAGTTACTTTAATGGGTCTCACCAAGTTCTTGACTTTCCCACACGGGTTCGCTTCTGGGCTTCTCAACCCGCCGCCACTAAACTCTCAACCTCTGATGGGCTCACTGTCCAAAGAATTCTAGACAATAATTGGAACATTCTCGACGAAAACGACAGCGACTGGAAGAGTCATGCCTCCGCCATAGCTCAATCTATTCATTTGATCAAACGCCGCTTACAGTGGACGAAATTGAAGGTTAGGTTGGATATGTTATCGGCTCAGCTGAATAAGCCAGACCTTTGGGATGATCCTGTGCTTGCAGGTAAAATAAGTCGAGAGCATGGTTTGCTACTTGGAAAAATGAAAGAGGTAAATGCATTGGAGCAAGAGTTGCTTGAGCATATTGACATGATAAAGCTTGCTCGCGAAGAGAATGATGATGAATTGGAATCGGAATCACTGAGAGCATTGCTTAACATGAGAAGAAATGCAAAAGAGAAAGAGCTAGAGGCATTGCTGGCTGGGGAGCAAGATTCTTGTTCTTGCTACATTGAGGTGCAGGGTGGGGCAGGGGGTACAGAGAGCATGGACTGGGCTGCTATGGTCATGCAGATGTACAAGTCATGGGCCCAGAGACGTGGATATAAAGTAACTGTAATGGATGAAATGCCTGGTGAGATTGCAGGAATCAAGCGAGCTACAATCAAAGTAGATGGTGAGTATGCATTTGGATATGCCAAAGCAGAAGTGGGAGTGCACAGGCTGGTGCGCATATCACCTTTTGACAGTAATAAGCGCCGACATACTTCATTTGCAGCTGTAGCAGTGATTCCAATCCTTGGTGATGGATCTGCCCGTGTACAAATTAATGAATCCGATCTTCGAATTGAACGATTTCGATCTGGTGGTGCTGGTGGTCAGCACGCTAATACAACTGAGAGTGCTGTAAGAATAATTCATATTCCTACAGGAGTTACTGCAACTTGTCAGAATGAAAGATCACAACATCAAAATAAGGCATCAGCGATGGCTGTGCTTCAGTCAAGATTGGACCAACTGGAGATGGCTCGCCAGGCGCAGTTGAATGCACAGCATACACAATCTCTCACTGACATTACTTGGGGCAGTCAGATACGTAGTTATGTGCTCCATCCTTACCGTATGGTGAAAGATCTTAGAACTAACTATGAGGTTTCAGATCCTGACTCTGTCCTTGAGGGAGATCTAGACGGTTTCATTTTGAGCTATCTATCAGCTTCTTTGGATAAGAATGAAGATGATGCTTAA 1449 0.45 MSYFLRRSLRRITFSLVGNSSKSHHIPASSTWFSCRQLSHSLPHNTSPWFTSNSLFPRGSSSYFNGSHQVLDFPTRVRFWASQPAATKLSTSDGLTVQRILDNNWNILDENDSDWKSHASAIAQSIHLIKRRLQWTKLKVRLDMLSAQLNKPDLWDDPVLAGKISREHGLLLGKMKEVNALEQELLEHIDMIKLAREENDDELESESLRALLNMRRNAKEKELEALLAGEQDSCSCYIEVQGGAGGTESMDWAAMVMQMYKSWAQRRGYKVTVMDEMPGEIAGIKRATIKVDGEYAFGYAKAEVGVHRLVRISPFDSNKRRHTSFAAVAVIPILGDGSARVQINESDLRIERFRSGGAGGQHANTTESAVRIIHIPTGVTATCQNERSQHQNKASAMAVLQSRLDQLEMARQAQLNAQHTQSLTDITWGSQIRSYVLHPYRMVKDLRTNYEVSDPDSVLEGDLDGFILSYLSASLDKNEDDA* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03909 482 Coils Coil 178 198 - -
Rops8g03909 482 PANTHER PEPTIDE CHAIN RELEASE FACTOR 2 112 472 - -
Rops8g03909 482 Gene3D - 334 430 - -
Rops8g03909 482 SMART PCRF_a_2 193 303 IPR005139 GO:0006415
Rops8g03909 482 Pfam RF-1 domain 340 447 IPR000352 GO:0003747|GO:0006415
Rops8g03909 482 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 35 - -
Rops8g03909 482 FunFam Peptide chain release factor 1 337 430 - -
Rops8g03909 482 Gene3D Release factor 113 224 - -
Rops8g03909 482 NCBIfam peptide chain release factor 2 121 471 IPR004374 GO:0005737|GO:0006415|GO:0016149
Rops8g03909 482 Pfam PCRF domain 139 328 IPR005139 GO:0006415
Rops8g03909 482 Coils Coil 397 417 - -
Rops8g03909 482 Hamap Peptide chain release factor 2 [prfB]. 111 475 IPR004374 GO:0005737|GO:0006415|GO:0016149
Rops8g03909 482 Gene3D - 238 467 - -
Rops8g03909 482 SUPERFAMILY Release factor 138 474 IPR045853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03909 Rops-Chr8 80117911 80121553 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03909 K02836 - gmx:100797427 734.561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03909 8 80117911 80121553 Rops8g03909 8 80117911 80121553 ECH