Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03901 ATGGCCATGGCTTTTGAAGCAAGTAGTCACTCTTGTCTATCACGCCCAACAACCACAACTAACTTATTATTCTCCTCCCATCTCAAACGACTGAAACCTATTTGGCTTCCTTCTCGATTCTTCCATTACCGATCGAAACGCCTCGTTTTGACGCCGAGACTTGTGGCGAAAGCTTGCGCGCTGAAGGTTGAAGAGAAGAATGTTGCGGGAAAATCAGGAGAGTGGGGGAAGGTTTCTGCAGTGTTGTTTGACATGGACGGTGTGCTCTGCAACAGCGAAGAACCTTCTAGAAGAGCCGCCGTCGATGTGTTCGCCGAGATCGGCGTCCAAGTCACCGTCGAAGATTTTGTGCCATTCATGGGAACCGGAGAAGCGAACTTTTTGGGAGGTGTTGCCTCTGTTAAGGGAGTTGAAGGATTTGACCCTGAAGCTGCAAAAAAGAGGTTCTTTGAAATATATTTAGATAAGTATGCAAAACCAGATTCCGGAATAGGGTTTCCAGGTGCCCTTGAACTCATTTCTCAGTGTAAAAGCAAAGGGCTTAAAGTGGCTGTTGCATCTAGTGCTGATCGTATAAAGGTTGATGCAAATCTAGCTGCTGCTGGTTTGCCATTGTCAACGTTCGACACGATCGTGTCTGCAGATGCTTTTGAGAATTTGAAACCTGCTCCTGATATTTTCTTAGCTGCGTCAAGAATATTGAATGTGCCTCCCAGTGAGTGTATTGTTATAGAAGACGCGCTAGCTGGAGTGCAAGCTGCCAAAGCTGCACAAATGAGATGCATAGCTGTAAGGACCACACTATCAGATGAGGATTTGGAATCTGGTGGCCCAAATTTTATCAGAGATGACATAGGAAGTGTTTCAATTGATGATATTCTCAATGGTGGCTCTATTGGATATAATAAGAGGATGCAGGGCTCTGAAACTCTAGATAATTTTTCACAATCTTCATCTGCTGTGCTTGTGGGAAAAACAGATGGAGTTGGAAAAACTACCAGTGGTACTGATGAGGGAATTTTCTCAACCGGAGGGTTGCAGGGTTCACGGCGAGATATACTGAGATTTGGAAGTCTGGGCATAGCTATCTCTTGCCTTGTCTTCACCTTAAGTAACTGGAAGGCAATGCAATATGCTTCCCTTAAAGCAGTTTGGAATCTGTTGTTTGGTGTTACCCAGCCACCCCTGGAACAGAAAGAAGGTAACTCAAGATCTGATAGGATCCAACAGTTTGTGAACTACATAGCTGATCTGGAAAGCAGGGGAGATGCTCAGATTGTTCCCGAATTTCCATCTAAACTTGATTGGCTGAATACAGCTCCACTTCAGTTTCGCAGGGATCTGAAAGGAAAAGTTGTTCTGCTTGATTTCTGGACTTATTGTTGCATAAACTGTATGCATGTATTGCCAGATCTAGACGCTTTGGAGAAAAAATACAAAGATAAGCCGTTCGTTGTTGTGGGCGTGCATTCTGCAAAGTTTGATAACGAGAAAGATTCTGAAGCCATTCGCAATGCAGTTCTACGCTATGACATCACTCACCCGGTTGTCAATGATGGAGACATGTACCTTTGGCGGAAGTTGGGCATAAATTCATGGCCAACATTTGCTATCATTGGCCCCAATGGTAAGCTCCTTGCACAACTTGCAGGAGAAGGTCGCAAGAAGGATCTTGATGATTTTGTGGAGGCAGCACTTCTGTTTTATGGAAAACAGAACATGTTGGACAGTACACCAATTACATTGAGTTTAGAGAAGGATAGTGATCCTCGCCTATCAACATCTCCATTGAAGTTTCCTGGAAAGCTAGCAATTGATGTCCTCAACAACAGGCTTTTTATTTCTGACAGCAATCATAACCGCGTAGTGGTTACCGACCTTGATGGGAATTTTATAGTACAAATTGGGAGCAGTGGGGAGGAAGGTTTGCAGGATGGCTCCTTTGACGATGCCACCTTTAACCGCCCTCAGGGCCTTGCTTATAATGCAAAGAAAAATATTCTTTATGTTGCAGACACCGAAAACCATGCTTTGAGGGAAATTGATTTTGTTAATGAGAAAGTGCTTACTCTCGCTGGAAATGGGACCAAGGGCTCAGATTATATTGGAGGGGGAAAAGGAGACACTCAGCTCCTCAATTCCCCTTGGGATGTCTGCTTTCATCCATTCGAAGAAAAGATTTATATTGCAATGGCTGGCCAGCATCAGATTTGGGAGCACAATATATTGAATGGAATTACTAGAGCATTTAGTGGTGATGGCTATGAAAGAAATTTAAATGGATCAAGTTCTACAAGCACATCATTTGCACAACCTTCTGGTCTTTCATTGTCTCGAGATCTAATGGAGATCTACATCGCTGATAGTGAGAGTAGTTCAATTCGAGCTGTTGATCTGAAAACAGGAGGATCTCGATTGCTAGCTGGTGGTGACCCTATTTTCCCTGACAATTTGTTTAAGTTTGGTGATCAAGATGGAATAGGCTCTGAAGTACTTCTTCAACATCCACTGGGGGTTATGTGTGGAAAGGATGGTGAAATTTATATCACAGATAGCTACAATCATAAGATCAAGAAGTTAGATCCAACTAGTAAAAGAGTTAGCACCATTGCAGGGACAGGAAAAGCTGGTTTCAGGGATGGAACAGCTGTGACAGCTCAGCTTTCTGAACCATCAGGACTTGTTGAAGGGAACAATGGGAGACTATTCATAGCTGATACAAACAACAGCTTAATCCGATACCTGGATTTGGATACTGATGAATTTGAACTGCATACCTTGGAGCTTAAAGGATTTCAGCCTCCTAAACCAAAATCAAAATCTTTAAAACGTCTCAGGAGACGATCATCAGCTGATGCGGTGCCAATTATCATTGATGCCATTTCATCAAGTGAGGGAAACTTATCTATTGAAATATCATTACCAAATGAGTATCATTTCTCAAAGGAAGCACGCAGTAGATTCAGTGTAGATATTGAACCTGAAGACGCTGTGAATATTGATCCTGTGGACGGATTCCTTAGTCCAGAAGGATCTGCAACCCTTCATTTTAAGAGATCGTCTAACTCTGCTTCAAGGGGAAGAATTAATTGCAAGGTTTACTATTGCAAAGAAGATGAGGTTTGTTTGTACCAATCCTTGCTGTTTGAGGTCCCCTTCCGAGAAGGAGTTTCTAACTCTACCAAAGCAGACGTCACTCTTGCTCATCTTGTGAAGCCCAAAACTTCAACCAACAGCTTACTGCAACCAGTTGCCCCGTGA 3261 0.4312 MAMAFEASSHSCLSRPTTTTNLLFSSHLKRLKPIWLPSRFFHYRSKRLVLTPRLVAKACALKVEEKNVAGKSGEWGKVSAVLFDMDGVLCNSEEPSRRAAVDVFAEIGVQVTVEDFVPFMGTGEANFLGGVASVKGVEGFDPEAAKKRFFEIYLDKYAKPDSGIGFPGALELISQCKSKGLKVAVASSADRIKVDANLAAAGLPLSTFDTIVSADAFENLKPAPDIFLAASRILNVPPSECIVIEDALAGVQAAKAAQMRCIAVRTTLSDEDLESGGPNFIRDDIGSVSIDDILNGGSIGYNKRMQGSETLDNFSQSSSAVLVGKTDGVGKTTSGTDEGIFSTGGLQGSRRDILRFGSLGIAISCLVFTLSNWKAMQYASLKAVWNLLFGVTQPPLEQKEGNSRSDRIQQFVNYIADLESRGDAQIVPEFPSKLDWLNTAPLQFRRDLKGKVVLLDFWTYCCINCMHVLPDLDALEKKYKDKPFVVVGVHSAKFDNEKDSEAIRNAVLRYDITHPVVNDGDMYLWRKLGINSWPTFAIIGPNGKLLAQLAGEGRKKDLDDFVEAALLFYGKQNMLDSTPITLSLEKDSDPRLSTSPLKFPGKLAIDVLNNRLFISDSNHNRVVVTDLDGNFIVQIGSSGEEGLQDGSFDDATFNRPQGLAYNAKKNILYVADTENHALREIDFVNEKVLTLAGNGTKGSDYIGGGKGDTQLLNSPWDVCFHPFEEKIYIAMAGQHQIWEHNILNGITRAFSGDGYERNLNGSSSTSTSFAQPSGLSLSRDLMEIYIADSESSSIRAVDLKTGGSRLLAGGDPIFPDNLFKFGDQDGIGSEVLLQHPLGVMCGKDGEIYITDSYNHKIKKLDPTSKRVSTIAGTGKAGFRDGTAVTAQLSEPSGLVEGNNGRLFIADTNNSLIRYLDLDTDEFELHTLELKGFQPPKPKSKSLKRLRRRSSADAVPIIIDAISSSEGNLSIEISLPNEYHFSKEARSRFSVDIEPEDAVNIDPVDGFLSPEGSATLHFKRSSNSASRGRINCKVYYCKEDEVCLYQSLLFEVPFREGVSNSTKADVTLAHLVKPKTSTNSLLQPVAP* 1087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03901 1086 FunFam NHL repeat-containing protein 2 582 738 - -
Rops8g03901 1086 CDD NHL-2_like 635 976 IPR045302 -
Rops8g03901 1086 Pfam NHL repeat 653 678 IPR001258 GO:0005515
Rops8g03901 1086 PANTHER NHL REPEAT-CONTAINING PROTEIN 2 103 1080 - -
Rops8g03901 1086 FunFam Chloroplast protein HCF243 813 917 - -
Rops8g03901 1086 SUPERFAMILY NHL repeat 594 921 - -
Rops8g03901 1086 CDD HAD_BPGM-like 80 266 - -
Rops8g03901 1086 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 78 89 IPR006439 -
Rops8g03901 1086 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 208 224 IPR006439 -
Rops8g03901 1086 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 176 189 IPR006439 -
Rops8g03901 1086 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 226 246 IPR006439 -
Rops8g03901 1086 NCBIfam HAD-IA family hydrolase 205 264 IPR006439 -
Rops8g03901 1086 Pfam Haloacid dehalogenase-like hydrolase 81 264 IPR041492 -
Rops8g03901 1086 Gene3D Putative phosphatase; domain 2 91 162 IPR023198 -
Rops8g03901 1086 FunFam NHL repeat-containing protein 2 405 569 - -
Rops8g03901 1086 Gene3D - 816 915 IPR011042 -
Rops8g03901 1086 Gene3D - 569 740 IPR011042 -
Rops8g03901 1086 SFLD C1.5.6: HAD, Beta-PGM, Phosphatase Like 77 285 - -
Rops8g03901 1086 SUPERFAMILY Thioredoxin-like 425 563 IPR036249 -
Rops8g03901 1086 SUPERFAMILY HAD-like 78 287 IPR036412 -
Rops8g03901 1086 ProSiteProfiles Thioredoxin domain profile. 387 567 IPR013766 -
Rops8g03901 1086 ProSiteProfiles NHL repeat profile. 833 863 IPR001258 GO:0005515
Rops8g03901 1086 Pfam Thioredoxin-like 450 544 IPR012336 -
Rops8g03901 1086 Gene3D - 80 273 IPR023214 -
Rops8g03901 1086 Gene3D Glutaredoxin 397 568 - -
Rops8g03901 1086 SFLD Haloacid Dehalogenase 77 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03901 Rops-Chr8 79935976 79952946 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03901 - - gmx:100795843 1857.42