Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03893 ATGTTGCAGTGCATATTTCTTCTATCAGATTCCGGAGAGGTAATGCTAGAGAAACAGCTCACTGGGCACCGTGTAGATCGCTCCATTTGTGCCTGGTTCTGGGACCAACCTGATTCCTTCAAGCAACAAACAGTGATTGCTTCTCCAACACATTATCTTTTCCATGTTCTTCGTGAGGGGATCACTTTTTTGGCCTGCACTCAAGTTGAAATGCCACCACTGATGGCTGTTGAGTTCCTGTGTAGGGTAGCTGATGTCCTCAATGATTATCTTGGAGGATTGAATGAAGATTTAATCAAGGACAACTTTGTCATTGTATATGAGCTGCTGGATGAGATGATAGACAATGGCTTCCCGCTGACTACTGAACCTAATATCCTGCAAGAGATGATAGCTCCACCAAATATTGTTAGCAAAGTCTTGAGTGTTGTGACTGGCAGCAGCTCCAATGTGAGTGACACGCTTCCGGGTGCTACAGCATCTCTTGTTCCTTGGAGAACAGCAGACCCAAAGTATGCCAACAATGAAGTTTATGTAGATCTTGTTGAAGAAATGGATGCAACAATAAACAGGGATGGAGTTCTGGTGAAATGTGAGATCAACGGCGAGGTTCAAGTAAATTCCCATATCACAGGTCTTCCTGATTTGACTCTTTCATTTACAAATCCTTCAATTCTAGATGACGTAAGGTTCCATCCCTGTGTTAGATTTCGACCTTGGGAATCCCATCAAATTCTTTCATTTGTGCCTCCTGATGGACAATTTAAGCTCATGAGTTACAGAGTTAGAAAATTGAAGAGCACCCCAATATATGTAAAGCCACAGTTGACTTCAGATGGCGGGACATGCCGTGTTAATGTATTGGTTGGCATAAGAAATGATCCTGGAAAGACAATTGATTCAGTTACTGTTCAGTTTCAGCTTCCATCTTGCATCTTATCCGCTGATCTGACTTCAAATCATGGAACAGTAAACATCCTTGCCAACAAGACATGCACTTGGTCCATTGGTCGGATCCCAAAGGACAAAGCCCCATCAATGTCTGGAACATTGGTGCTTGAGACTGGATTGGAGCGCCTTCATGTCTTTCCTACATTTCAAGTGGGTTTTAGGATTATGGGTGTGGCCCTCTCTGGTCTGCAAATAGATAAACTGGATCTTCAGACTGTACCCTACCGTTTCTACAAAGGTTTTCGAGCTCTAACTCGGGCTGGTGAATTTGATGTCAGGTCATGA 1236 0.4337 MLQCIFLLSDSGEVMLEKQLTGHRVDRSICAWFWDQPDSFKQQTVIASPTHYLFHVLREGITFLACTQVEMPPLMAVEFLCRVADVLNDYLGGLNEDLIKDNFVIVYELLDEMIDNGFPLTTEPNILQEMIAPPNIVSKVLSVVTGSSSNVSDTLPGATASLVPWRTADPKYANNEVYVDLVEEMDATINRDGVLVKCEINGEVQVNSHITGLPDLTLSFTNPSILDDVRFHPCVRFRPWESHQILSFVPPDGQFKLMSYRVRKLKSTPIYVKPQLTSDGGTCRVNVLVGIRNDPGKTIDSVTVQFQLPSCILSADLTSNHGTVNILANKTCTWSIGRIPKDKAPSMSGTLVLETGLERLHVFPTFQVGFRIMGVALSGLQIDKLDLQTVPYRFYKGFRALTRAGEFDVRS* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03893 411 ProSitePatterns Clathrin adaptor complexes medium chain signature 1. 163 183 IPR018240 GO:0006886|GO:0016192|GO:0030131
Rops8g03893 411 CDD AP-3_Mu3_Cterm 163 410 - -
Rops8g03893 411 Pfam Adaptor complexes medium subunit family 163 410 IPR028565 -
Rops8g03893 411 Gene3D Mu homology domain, subdomain B 163 406 - -
Rops8g03893 411 ProSiteProfiles Mu homology domain (MHD) profile. 174 410 IPR028565 -
Rops8g03893 411 FunFam AP-2 complex subunit mu, putative 1 138 - -
Rops8g03893 411 SUPERFAMILY SNARE-like 1 138 IPR011012 -
Rops8g03893 411 CDD AP3_Mu_N 3 138 - -
Rops8g03893 411 PRINTS Clathrin coat assembly protein signature 226 253 IPR001392 GO:0006886|GO:0016192|GO:0030131
Rops8g03893 411 PRINTS Clathrin coat assembly protein signature 96 123 IPR001392 GO:0006886|GO:0016192|GO:0030131
Rops8g03893 411 PRINTS Clathrin coat assembly protein signature 333 344 IPR001392 GO:0006886|GO:0016192|GO:0030131
Rops8g03893 411 PANTHER AP COMPLEX SUBUNIT MU 1 410 - -
Rops8g03893 411 Gene3D Mu homology domain, subdomain B 268 408 - -
Rops8g03893 411 PIRSF AP_complex_mu 1 411 IPR001392 GO:0006886|GO:0016192|GO:0030131
Rops8g03893 411 Gene3D - 1 138 - -
Rops8g03893 411 SUPERFAMILY Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor 163 410 IPR036168 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03893 Rops-Chr8 79878234 79881983 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03893 K12398 - gmx:100799191 783.097
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03893 8 79878234 79881983 Rops8g03893 8 79878234 79881983 ECH