Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03887 ATGTCATTGCGACTGTTTCTATTGCTATCTCTATGGTCTTGTTCTTCAGCGGCGAGTAGTGTGAGTAAGTGCGATAAGCCTGCAGTGCTATTCGTGTTCGGCGATTCGAACTCGGACACGGGTGGACTCGTCTCTGGACTCGGTTTCCCCATCAATCTTCCCAATGGCCGCACTTTCTTTCACAGATCCACCGGTCGCTTGTCCGATGGACGCCTCCTCATTGACCTTCTCTGCCAAAGTTTGAATACAAATTTTTTGACCCCATACTTGGACGCCTTGTCTGGATCCACATTCACAAATGGAGCAAACTTTGCAGTGGTGGGTTCCTCTACCCTCCCCAAATATGAGCCTTTCTCTTTAAATATACAGGTCATGCAGTTCGGGCATTTCAAAGCTCGTTCCCTTGAACTTGTTGCAGCAGGTGCAAGAAATTTAATCAATGATGAAGGCTTCCGGAATGCACTCTACTTGATTGATATTGGGCAAAATGACCTTGCTGATTCATTCTTAAAAAATATGTCATTTGCGCAAGTCACCAAGAGGATCCCAACAGTTATCACTGAAATTGAGAATGCTGTCAAGAGTTTGTATAATGAAGGCGCTAGGAAATTTTGGATTCACAATACCGGGCCCCTGGGATGTCTTCCTAAATTACTTGCATTGGCTCAGAAGAAGGATCTGGATTCAGTCGGATGCCTTTCTAGTTACAACTCTGCTGCAAGATTGTTTAATGAAGCGCTGTATCATTTGAGTCAGAAACTAAGAACCCAATTGAAGGATGCCACTTTAGTCTATGTTGATATTTATGCCATTAAGTATGACCTCATCTCAAATGCCACCAAATATGGTTTCTCAAATCCATTGATGGTATGCTGTGGCTATGGAGGGCCTCCTTACAATTTTGACGTAAGAGTAACATGTGGTCAACCTGGTTATCAGGTTTGTAATGAAGGATCTCGGTATGTGAGTTGGGATGGAACCCATCTTACTGAAGCTGCAAATTCATGGATAGCTTCTAAGATACTTTCTATGGCTTATTCCACACCACGTACACCTTTTGATTTCTTCTGCCACCACTGA 1080 0.4352 MSLRLFLLLSLWSCSSAASSVSKCDKPAVLFVFGDSNSDTGGLVSGLGFPINLPNGRTFFHRSTGRLSDGRLLIDLLCQSLNTNFLTPYLDALSGSTFTNGANFAVVGSSTLPKYEPFSLNIQVMQFGHFKARSLELVAAGARNLINDEGFRNALYLIDIGQNDLADSFLKNMSFAQVTKRIPTVITEIENAVKSLYNEGARKFWIHNTGPLGCLPKLLALAQKKDLDSVGCLSSYNSAARLFNEALYHLSQKLRTQLKDATLVYVDIYAIKYDLISNATKYGFSNPLMVCCGYGGPPYNFDVRVTCGQPGYQVCNEGSRYVSWDGTHLTEAANSWIASKILSMAYSTPRTPFDFFCHH* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03887 359 FunFam GDSL esterase/lipase At1g09390 18 346 - -
Rops8g03887 359 Gene3D SGNH hydrolase 21 347 IPR036514 -
Rops8g03887 359 PANTHER ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN 8 344 - -
Rops8g03887 359 SUPERFAMILY SGNH hydrolase 30 343 - -
Rops8g03887 359 CDD SGNH_plant_lipase_like 27 343 IPR035669 -
Rops8g03887 359 Pfam GDSL-like Lipase/Acylhydrolase 30 341 IPR001087 GO:0016788
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03887 Rops-Chr8 79825628 79829604 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03887 17 348 Acyl Lipid Metabolism Gene Families AT4G10950 27.528 3.16e-29 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03887 - - gmx:100797617 600.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03887 8 79825628 79829604 Rops8g03887 8 79825628 79829604 ECH