Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03882 ATGGGGATCAAAAACTTGGTTTTGATGGCTTTTATGTTGGCATTGGTTGGTCAATTTGGGAATTGTTTTGGTGCTCGTCATCTTCACCCACACAAACACTCACCCAATAAAAGGCTTCATGATGGTGGTTTTGTTCAACGAAGTGGCACCCATTTTGTTCTGAAAGGGAAGCCACATTACTTAAATGGGTTCAATGCTTACTGGTTAATGAACATAGCATCCGACCCATCAACCATGTCCAAGGGCACCACAACTTTTCAAGAAGCTTCCAAACATGGTTTAAACTTAGCAAGAACCTGGGCCTTCAATGATGGAGATTATAAAGCCCTTCAAATTTCCCTTGGTTCTTATGATGAGAATGTCTTCAGGGGATTGGATTTTGTGATATCAGAAGCAGGGAAATATGGAGTGAAATTGATACTAAGCTTGGTGAATAACTGGAATGATTATGGTGGAAAAAATAAGTATGTCCAATGGGCAAGAGAAAGTGGTCAGAATGTGAACAATGATGATGATTTCTTCACTCACCCCGTTGTTAAACAATATTACAAAAACCATGTCAAGGCTGTGTTGACAAGAAACAATACCATAACTGGATTGGCATATAAGGACGACCCAACCATTTTTGCTTGGGAGCTTATGAATGAACCTCGTTCCCAGAATGACTATTCTGGAAAATCAATTCAGGATTGGGTGAGTGAAATGGCTGTGTATGTGAAATCCATTGATAGCAATCATTTACTGGAAGTTGGGCTTGAAGGATTTTATGGTGAATCAATGCCAGAAAAGAAGCAATTCAATCCTGGATACCAAGTTGGAACTGATTTCATTTCCAATAACCAAGTTCCTCAAATTGATTTTGCCACCATTCATCTCTACCCTGAACAATGGGTATCGGGCTCAGATGAAACAGCCCAAGATGCATTTGTTGACAAGTGGGTCCAAGCCCATATTCAAGACTCAAATGATGTTTTGAAAAAGCCAATTCTTATTACCGAGTTTGGAAAGTCTTCAAGGTCTTCAGGATACACTGTGGATGAAAGGAATGGTTATTTTGGGAAACTATACAATTTCATATACAACAGTGCCAGCAATGGAGGCTCATGTGGTGGTGGGCTTTTCTGGCAGTTCATGGTTCAAGGATTGGATAGTTTCCATGATGGCTATGAAGTTATCATGGAGGAGAGTCCTTCAACAGCAAATGTTATCACTCAACAATCTCAGAGGCTATCAAATCTTAAATAG 1245 0.3984 MGIKNLVLMAFMLALVGQFGNCFGARHLHPHKHSPNKRLHDGGFVQRSGTHFVLKGKPHYLNGFNAYWLMNIASDPSTMSKGTTTFQEASKHGLNLARTWAFNDGDYKALQISLGSYDENVFRGLDFVISEAGKYGVKLILSLVNNWNDYGGKNKYVQWARESGQNVNNDDDFFTHPVVKQYYKNHVKAVLTRNNTITGLAYKDDPTIFAWELMNEPRSQNDYSGKSIQDWVSEMAVYVKSIDSNHLLEVGLEGFYGESMPEKKQFNPGYQVGTDFISNNQVPQIDFATIHLYPEQWVSGSDETAQDAFVDKWVQAHIQDSNDVLKKPILITEFGKSSRSSGYTVDERNGYFGKLYNFIYNSASNGGSCGGGLFWQFMVQGLDSFHDGYEVIMEESPSTANVITQQSQRLSNLK* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03882 414 Gene3D Glycosidases 40 414 - -
Rops8g03882 414 PANTHER - 5 413 IPR045053 GO:0004553
Rops8g03882 414 Pfam Cellulase (glycosyl hydrolase family 5) 56 351 IPR001547 GO:0004553|GO:0071704
Rops8g03882 414 SUPERFAMILY (Trans)glycosidases 44 403 IPR017853 -
Rops8g03882 414 FunFam Mannan endo-1,4-beta-mannosidase 6 41 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03882 Rops-Chr8 79771129 79771560 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03882 43 414 Glycoside Hydrolase AT1G02310 58.005 9.13e-162 460
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03882 K19355 - gmx:100791612 678.322