Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03880 ATGGGGACTGAAAATCCCGGTCGTCCTGGCTTCCCTGCAAGACCTGCTGCTCCCTCACCTTTTGCTGCTTCGCAGCCTGTGACACCTTTTTCATCAACTGGTCCAGTGGCTGGATCAGATCCTCCTTCTTTCCGACCTGGTCCTCCTTCCCAAACCTCCGCCCCATTTTCACCAGTTATACCAGGGGCACCCACATTTAGACCTACACCACCAGGCAGGTTCAATGACCCTTCAGTGCCTGCTCCCCCTCCACCACCATCCAATGCCCCACCAGCTGCTGGACCTTTCCAGAATTATCCAGCACCGCCCTTTTCCTCAACACTTCAACCGCCTCACGTACGTGCTTCCCCCATGGGACAACCACCGTTTCAACCTCCTCCTACTCATGCACCATCTCTTCCCACATCTCCTCCATCTCATCCACAGATGCCTTTTGTTCCGATGGGGTCTCCACCGCCGAGTGGTTCAAATGTTCCTCCTCCCACATTTCCGCCATCTTTTCCTGGATACGCCCATAAGCAGCCTGGTGCTGAAATGCAAGCTCCACCTATGCATTCCTCTCTGTCTGCTAATCAAGGAAACTATGGGCCTGTCCCGCCTGCAGCATCTTCTCCTTATTTACCTCATCAAGGAGGCTATGTTCCATCACCCCCAGTGGCTACTCCACTAGGTATCCAGCCAATGCAGCAGCCAGGATCTGTACCCCCTGTTGGTTCTATTCAGGGCTTGACAGAAGACTTCAGTTCACTCACAATGCAAACTCGTCCGGGAACGATGGATCCATTATTTGATGCTAAAGAACTTCCAAGGCCGTTGGATGGTGATGTGGAGCCAAAGAATTTGGATGATATGTATCCCATGAACTGCAATCCCAGATATCTACGACTCACAACTAGTGCAGTTCCTAGCTCACAGTCCTTAGCTGCAAGGTGGCATCTGCCTCTTGGAGCTGTTGTATGTCCTCTTGCAGAATCTCCCGATGGGGAAGAGGTGCCTATAGTTAATTTTGCTCCGGCTAGTGTTGTACGCTGTAGAAGATGTCGCACATATGTGAATCCTTATGTGACATTTACAGAAGCTGGAAGAAAATTCCGCTGCAATGTTTGCACCTTGCTTAATGATGTTCCTAGTGAATATTATGCACAATTAGATGCCACTGGCAAAAGAGTTGATTTGAATCAACGACCTGAGCTTATGAAGGGTACCGTGGAATTTGTTGCCCCTGCTGAGTATATGGTGCGGCCTCCTATGCCCCCAGTATATTTCTTCCTCATCGATGTTTCCATATCTGCAGTTAGAAGTGGCATGATTGAGGTTGTGGCCCAAACGATCAAGTCATGCCTAGATGAGCTGCCTGGCTTTCCACGAACACAAATAGGGTTTGCAACTTTTGACAGCACAATACATTTTTATAATATGAAGTCATCTTTGACTCAACCACAGATGTTGGTAGTCTCAGATCTGGATGACATATTTGTTCCGCTGCCAGATGACCTTCTCGTTAACTTATCTGAATCAAGAAGTGTGGTGGAAACCTTCCTAGATAGTTTGCCAACCATGTTCCAGGACAATGTTAATCTGGAATCAGCTTTTGGTCCTGCTCTTAAGGCTGCATTCATGGTTATGAATCAACTTGGAGGGAAATTGTTAATTTTTCAAAACACACTTCCATCTCTTGGTGTTGGTCGCTTGAAGTTACGCGGAGATGATTCTCGTGTTTATGGGACAGATAAAGAAAATGCTCTGAGACTGCCTGAAGACCCATTTTATAAGCAAATGGCTGCTGAGTTTTCTAAGTACCAAATCTCAGCGAATGTATATGCATTCAGTGATAAGTACACTGACATAGCCTCATTGGGAACTCTGGCAAAGTATACTGCTGGTCAAGTGTATTACTATCCAGCTTTCCAATCAGCCATTCATGGGGAGAAATTGAGACACGAGTTAAGGAGAGACCTTACTAGAGAAACTGCATGGGAAGCTGTGATGCGTATTAGATGTGCAAAAGGTGTTCGTTTCACAACTTATCATGGAAACTTCATGCTAAGGTCCACTGATTTGTTAGCACTTCCAGCCGTAGATTGTGATAAAGCTTTCGCCATGCAGTTATCACTTGAAGAGACGTTATTGACAACTCAGACAATGTATTTCCAAGTTGCATTGCTATATACTGCATCTTGTGGAGAAAGGCGTATCAGAGTACACACAATGGCAGTGCCAGTAGTTACTGACTTGGCAGATATCTATCGTCTGGCTGATACCGGTGCAATTGTATCTCTGTTTAGTAGGCTAGCAATTGAGAAAACGTTGTCCCAAAAACTGGAAGATGCAAGGAGTGCTGTGCAATTAAGAATTGTGAAAGCCCTCAAGGAATATCGAAATATTTATGCGGTGCAACATCGCTTGGCCAACAGAATGATACATCCGGAGTCTTTAAAGTTCCTAATGTTGTATGGATTAGCTCTTTGTAGATCAATGGCTCTACGTGGAGGGTATGGTGATGTTCCACTGGATGAACGATGTGCGGCAGGACATACAATGATGACTCTACCAATAAAAAGGCTGTTGAAACTTCTCTATCCTAGCTTGATTCGACTTGATGAATATCTTCTGAAGGCATCTGTACAGGCTGATGACTTGGAAAGTATTGAAAGAAGGTTACCTTTGACTGGGGAGAGCTTAGACTCTAGGGGCCTTTATCTATATGATGATGGCTTCCGGTTTATTATATGGTTTGGTAGGGTGATTTCACCTGATATAGCCAAGAGTTTACTTGGGGCAGACTTTGCGGCAGAATTATCAAAGGCTACTCTCAATGAGCATAATAATGAAATGTCAAGGAGGCTGATGAGGGTACTTGAAAAATTGAGAAATACAGATCGTGCATATTACCAGTTGTGCCACCTTGTGAGGCAAGGTGAACAGCCCAAAGAAGGATTCCTCCTTCTTGCAAACCTTGTTGAGGACCAGATGGGTGGTAACAGTGGGTATGTTGATTGGATGCTACAGATATCCCGACAAGTGCAACACTCATAA 3036 0.4552 MGTENPGRPGFPARPAAPSPFAASQPVTPFSSTGPVAGSDPPSFRPGPPSQTSAPFSPVIPGAPTFRPTPPGRFNDPSVPAPPPPPSNAPPAAGPFQNYPAPPFSSTLQPPHVRASPMGQPPFQPPPTHAPSLPTSPPSHPQMPFVPMGSPPPSGSNVPPPTFPPSFPGYAHKQPGAEMQAPPMHSSLSANQGNYGPVPPAASSPYLPHQGGYVPSPPVATPLGIQPMQQPGSVPPVGSIQGLTEDFSSLTMQTRPGTMDPLFDAKELPRPLDGDVEPKNLDDMYPMNCNPRYLRLTTSAVPSSQSLAARWHLPLGAVVCPLAESPDGEEVPIVNFAPASVVRCRRCRTYVNPYVTFTEAGRKFRCNVCTLLNDVPSEYYAQLDATGKRVDLNQRPELMKGTVEFVAPAEYMVRPPMPPVYFFLIDVSISAVRSGMIEVVAQTIKSCLDELPGFPRTQIGFATFDSTIHFYNMKSSLTQPQMLVVSDLDDIFVPLPDDLLVNLSESRSVVETFLDSLPTMFQDNVNLESAFGPALKAAFMVMNQLGGKLLIFQNTLPSLGVGRLKLRGDDSRVYGTDKENALRLPEDPFYKQMAAEFSKYQISANVYAFSDKYTDIASLGTLAKYTAGQVYYYPAFQSAIHGEKLRHELRRDLTRETAWEAVMRIRCAKGVRFTTYHGNFMLRSTDLLALPAVDCDKAFAMQLSLEETLLTTQTMYFQVALLYTASCGERRIRVHTMAVPVVTDLADIYRLADTGAIVSLFSRLAIEKTLSQKLEDARSAVQLRIVKALKEYRNIYAVQHRLANRMIHPESLKFLMLYGLALCRSMALRGGYGDVPLDERCAAGHTMMTLPIKRLLKLLYPSLIRLDEYLLKASVQADDLESIERRLPLTGESLDSRGLYLYDDGFRFIIWFGRVISPDIAKSLLGADFAAELSKATLNEHNNEMSRRLMRVLEKLRNTDRAYYQLCHLVRQGEQPKEGFLLLANLVEDQMGGNSGYVDWMLQISRQVQHS* 1012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03880 1011 Gene3D - 287 400 - -
Rops8g03880 1011 SUPERFAMILY beta-sandwich domain of Sec23/24 180 751 - -
Rops8g03880 1011 Pfam Sec23/Sec24 zinc finger 342 379 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Rops8g03880 1011 SUPERFAMILY Helical domain of Sec23/24 753 860 IPR036175 GO:0006886|GO:0006888|GO:0030127
Rops8g03880 1011 MobiDBLite consensus disorder prediction 1 199 - -
Rops8g03880 1011 Gene3D Severin 861 989 IPR029006 -
Rops8g03880 1011 Pfam Sec23/Sec24 helical domain 753 856 IPR006900 GO:0006886|GO:0006888|GO:0030127
Rops8g03880 1011 Pfam Gelsolin repeat 888 939 IPR007123 -
Rops8g03880 1011 Gene3D Sec23/Sec24 helical domain 742 1008 - -
Rops8g03880 1011 MobiDBLite consensus disorder prediction 184 198 - -
Rops8g03880 1011 Pfam Sec23/Sec24 beta-sandwich domain 658 742 IPR012990 -
Rops8g03880 1011 MobiDBLite consensus disorder prediction 41 98 - -
Rops8g03880 1011 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 873 1009 IPR036180 -
Rops8g03880 1011 SUPERFAMILY vWA-like 416 655 IPR036465 -
Rops8g03880 1011 Pfam Sec23/Sec24 trunk domain 416 652 IPR006896 GO:0006886|GO:0006888|GO:0030127
Rops8g03880 1011 PANTHER SEC24-RELATED PROTEIN 90 1008 - -
Rops8g03880 1011 Gene3D von Willebrand factor, type A domain 418 655 IPR036465 -
Rops8g03880 1011 MobiDBLite consensus disorder prediction 24 38 - -
Rops8g03880 1011 CDD Sec24-like 416 657 IPR041742 GO:0006886|GO:0006888|GO:0030127
Rops8g03880 1011 Gene3D - 289 741 - -
Rops8g03880 1011 MobiDBLite consensus disorder prediction 115 168 - -
Rops8g03880 1011 FunFam protein transport protein Sec24D isoform X1 418 655 - -
Rops8g03880 1011 SUPERFAMILY Zn-finger domain of Sec23/24 332 415 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03880 Rops-Chr8 79754423 79764257 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03880 K14007 - gmx:100791083 1700.64