Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03847 ATGGCTTCCACTCTTCTGCCCCTCGCTACCTTGTTTCTGGCTTTCTCTGCCTCTTTTCTCCAGATCGCTGGGGCAGAAACAGAACATCAGCTTACTAGTCTCAAGCTTAACTCTCGTATTCTTCAGGAGTCTATTGCTAAGCAGATTAACGAAAATCCAGGGGCAGGATGGGAGGCTGCTATAAATCCTCGTTTCTCCAATTATACTGTTGCACAATTTAAGCGCCTTCTTGGAGTCAAACCAACGCCTAGGAAGGAACTGAGAAGTACACCTGTTATAACTCATCCAAGATCATTGAAATTCCCACAGAATTTTGATGCAAGGACAGCTTGGTCACAGTGTAGCACTATTGGAACAATTCTAGATCAGGTAATTCTTTTTTGCCCTCATATTAGCAACTTTTCATACGGTCATTGTGGTTCTTGTTGGGCATTTGGTGCTGTTGAATCATTACAAGATCGCTTTTGCATTCATTTTGACGTGAATATATCTCTCTCTGTTAATGACGTGCTTGCATGCTGTGGCTTTCTCTGTGGGTCTGGCTGTGATGGTGGGTATCCCCTATATGCTTGGCGATACTTGGCCCACCATGGTGTTGTCACTGAAGAGTGTGACCCATACTTTGATCAAAAGGGCTGTTCTCATCCTGGTTGCGAGCCAGCATATCGAACTCCCAAGTGTGTTAGAAAGTGTGTTGACGGGAACCTGCTTTGGAAGAAGTCAAAGCACTATAGTGTGAATGCATATACGATCAAGTCTGATCCATATGATATCATGGCAGAAGTTTACAAGAATGGGCCAGTTGAAGTCGCATTCACTGTTTTTGAGGATTTTGCTCACTACAAATCAGGAGTTTACAAACACATCACAGGTTATGCACTGGGCGGTCATGCAGTAAAGCTTATTGGGTGGGGAACAACAGATGATGGGGAGGACTATTGGCTTCTCGCAAATCAGTGGAATAGAAGTTGGGGAGATGATGGTTACTTCAAGATCAGAAGAGGAGTAAACGAATGTGGGATTGAAGACGAGGTTACTGCTGGTTTGCCTTCCACCAAAAATCTCGTAAGAGAGGTGACTGACATGGACGCTGACGCTGACGCTTCATTCTGA 1113 0.4447 MASTLLPLATLFLAFSASFLQIAGAETEHQLTSLKLNSRILQESIAKQINENPGAGWEAAINPRFSNYTVAQFKRLLGVKPTPRKELRSTPVITHPRSLKFPQNFDARTAWSQCSTIGTILDQVILFCPHISNFSYGHCGSCWAFGAVESLQDRFCIHFDVNISLSVNDVLACCGFLCGSGCDGGYPLYAWRYLAHHGVVTEECDPYFDQKGCSHPGCEPAYRTPKCVRKCVDGNLLWKKSKHYSVNAYTIKSDPYDIMAEVYKNGPVEVAFTVFEDFAHYKSGVYKHITGYALGGHAVKLIGWGTTDDGEDYWLLANQWNRSWGDDGYFKIRRGVNECGIEDEVTAGLPSTKNLVREVTDMDADADASF* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03847 370 Gene3D Cysteine proteinases 31 356 - -
Rops8g03847 370 FunFam cathepsin B-like protease 2 34 355 - -
Rops8g03847 370 Pfam Papain family cysteine protease 136 348 IPR000668 GO:0006508|GO:0008234
Rops8g03847 370 Pfam Peptidase family C1 propeptide 41 83 IPR012599 GO:0004197|GO:0050790
Rops8g03847 370 SUPERFAMILY Cysteine proteinases 44 350 IPR038765 -
Rops8g03847 370 PRINTS Papain cysteine protease (C1) family signature 313 319 IPR000668 GO:0006508|GO:0008234
Rops8g03847 370 PRINTS Papain cysteine protease (C1) family signature 297 307 IPR000668 GO:0006508|GO:0008234
Rops8g03847 370 PRINTS Papain cysteine protease (C1) family signature 136 151 IPR000668 GO:0006508|GO:0008234
Rops8g03847 370 SMART pept_c1 101 349 IPR000668 GO:0006508|GO:0008234
Rops8g03847 370 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 48 342 IPR013128 GO:0008234
Rops8g03847 370 CDD Peptidase_C1A_CathepsinB 102 348 - -
Rops8g03847 370 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 295 305 IPR025660 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03847 Rops-Chr8 79279702 79284768 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03847 K01363 - gmx:100788988 648.662