Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03845 ATGATGATGGCAAGCGAGTTACATGGAATTCCCATGTTGAAGCCATCCTTCCACCATGACAGGATTTTGTCTTCCTCATTCTCTGGTAGCAGAGTGAACTTGCTGCATTCAACTGGTTTTCCTTCAGGAAAATTCTTAAGTATTACACAGAGAAACACTACTAAAATATTTTTGGCTACTTCTACTCTTGCAGATGTTGCAAATGATTTTATGGCCCTACAATCACCAATACTTGCAGGACCAGAAGCCAACCCAAAGACTGTTGCATCAATCATATTAGGTGGTGGAGCTGGAACTCGTCTATTCCCTCTTACTCAAAAAAGGGCTAAACCTGCTGTGCCAATTGGAGGATGCTATAGGCTGGTGGACATACCAATGAGTAATTGTATTAACAGTGGAATTAATAAAATTTTTGTCCTTACACAATTTAATTCTCAGTCCCTCAACCGCCACATTGCTAGAACATATAATTTGGGAGGTGGCATCAACTTTGGGGGTGGTTTTGTGGAGGTATTGGCAGCAACTCAAACACCTGGTGAATCAGGAAAGAAGTGGTTTCAGGGCACTGCTGATGCTGTAAGACAATTCCTTTGGTTGTTTGAGGATGCTGAGCATAAAAACATTGAGAACATTCTGATTTTGTGTGGAGATCAGCTCTATCGAATGGATTACATGGAACTTGTGCAGAAGCACATTAATTCATGTGCTGATATATCCGTATCTTGTCTCCCAGTTGATGGCAGTCGTGCATCTGATTTTGGATTAGTGAAGGTTGATGAAAGAGGACAGATACGCCAGTTCATGGAAAAACCCAAGGGCGAACTGTTAAGATCTATGCATGTAGATACGAATATTTTTGGATTATCAGCTCAAGAAGCAAGGAAATTTCCATATATTGCATCAATGGGTATATACGTGTTTAAAGTAGATGTGCTGCTAAAAATTCTCAGGAGCTGTTATCCTAATGCAAATGATTTTGGATCCGAGGTCATTCCGACGGCTTTAAAAGATTTTAAGGTCCAGGCATGTCTTTTCAGTGGTTATTGGGAAGATATTGGGACTATAAAATCTTTCTTTGATGCAAACTTGGCTCTTATGGATCAGCCACCCAAGTTTCAGTTGTATGATCAGTCAAAGCCTATTTTTACATGTCCTCGGTTCCTACCACCAACTAAAATGGAGAAGTGCCAGGTAATTAATTCTTTGATTTCAGAAGGTTGCTTTTTAAGAGAATGCACTGTTGAACATTCGATTGTGGGAATTCGCTCAAGACTTGATTCTGGAGTGCAGCTAAAGGATACCATGATGATGGGTGCTGACTATTACCAAACAGAGGCTGAAATAGCAGCTCTTTTAGCAGCTGGAAATGTTCCAATAGGCATTGGGAAAGATACCAAAATTATGAATTGTATAATTGACAAAAACGCAAGAATTGGAAACAATGTAATAATTGCAAACAAAGAAAATGTGCAGGAGGCTGATAGACCCTCTGAGGGGTTTTATATTAGGTCAGGAATCACGGTGGTGTTAAAAGACTCTGTAATAAACAATGGTACAATCATTTAA 1566 0.3959 MMMASELHGIPMLKPSFHHDRILSSSFSGSRVNLLHSTGFPSGKFLSITQRNTTKIFLATSTLADVANDFMALQSPILAGPEANPKTVASIILGGGAGTRLFPLTQKRAKPAVPIGGCYRLVDIPMSNCINSGINKIFVLTQFNSQSLNRHIARTYNLGGGINFGGGFVEVLAATQTPGESGKKWFQGTADAVRQFLWLFEDAEHKNIENILILCGDQLYRMDYMELVQKHINSCADISVSCLPVDGSRASDFGLVKVDERGQIRQFMEKPKGELLRSMHVDTNIFGLSAQEARKFPYIASMGIYVFKVDVLLKILRSCYPNANDFGSEVIPTALKDFKVQACLFSGYWEDIGTIKSFFDANLALMDQPPKFQLYDQSKPIFTCPRFLPPTKMEKCQVINSLISEGCFLRECTVEHSIVGIRSRLDSGVQLKDTMMMGADYYQTEAEIAALLAAGNVPIGIGKDTKIMNCIIDKNARIGNNVIIANKENVQEADRPSEGFYIRSGITVVLKDSVINNGTII* 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03845 521 SUPERFAMILY Nucleotide-diphospho-sugar transferases 88 482 IPR029044 -
Rops8g03845 521 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 78 386 IPR029044 -
Rops8g03845 521 SUPERFAMILY Trimeric LpxA-like enzymes 385 521 IPR011004 -
Rops8g03845 521 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE-RELATED 61 521 IPR011831 GO:0005978|GO:0008878
Rops8g03845 521 ProSitePatterns ADP-glucose pyrophosphorylase signature 2. 185 193 IPR005836 GO:0005978|GO:0008878
Rops8g03845 521 CDD LbH_G1P_AT_C 389 515 - -
Rops8g03845 521 CDD ADP_Glucose_PP 91 352 - -
Rops8g03845 521 FunFam Glucose-1-phosphate adenylyltransferase 387 521 - -
Rops8g03845 521 FunFam Glucose-1-phosphate adenylyltransferase 72 386 - -
Rops8g03845 521 ProSitePatterns ADP-glucose pyrophosphorylase signature 3. 300 310 IPR005836 GO:0005978|GO:0008878
Rops8g03845 521 NCBIfam glucose-1-phosphate adenylyltransferase 89 485 IPR011831 GO:0005978|GO:0008878
Rops8g03845 521 ProSitePatterns ADP-glucose pyrophosphorylase signature 1. 94 113 IPR005836 GO:0005978|GO:0008878
Rops8g03845 521 Pfam Nucleotidyl transferase 90 366 IPR005835 GO:0009058
Rops8g03845 521 Gene3D Hexapeptide repeat proteins 387 521 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03845 Rops-Chr8 79257766 79263591 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03845 K00975 - gmx:100805739 938.717