Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03844 ATGTATCATTTTCCGCAAAGAAATAAGACTGAAAATGATGCATTTCAAAATTCCCTGAATGTGATCCATTTGCACACAGCAAAAAACAAACTCTCAAACTCTTCCCCTTCTCAAAAGCTTTGTCTTCCTCATCGCCTCTCTTATTCACAGTTTTTGGCTTTCACCTTTCTATTGGGACTAATTGATATGGAGTGGAGGAATGAATGTCTAAAAAACATGGTCTTGATCGCTTTTATGGTGACCTTGGTTGTTGTTCAACATGTGAAGGGCAAGGAGGGTGATTCTATTCATGACTCACTTCACATAGGTGGCTTTGTTCAACGAAATGGCACCTATTTCATTCTGAACAAGAAACATTTCTATTTCAACGGATTCAACGCCTACTGGTTGATGTACATGGCATCTGACCCATCCACAAGGTCCAAGGTCACTACCACTTTACAACAAGCTTCCAATCATGGTTTGACTGTTGCAAGAACTTGGGCTTTCAGTGATGGAGTTTACAGAGCCCTTCAGGTTTCTCCAGGTTCCTATGATGAGAAAGTATTTAGGGGACTGGATTTTGTAATAGCAGAAGCAGGAAAATATGGGGTGCGATTGATACTGAGTTTGGTGAACAACTGGAAAGAATTTGGTGGGAAAAATCAATATGTCAAATGGGTAAGTGAACATGGCGAGTACTTGAACGGTGAAGATGACTTCTTTACTCACCCAGTTGTTAAGCAATACTACAAAAACCATATTAAGGCTGTGCTGACAAGAAGAAACACAATAACTCAGGTGGCATATAAGGACGATCCAGCCATTTTTGCATGGGAACTTATGAATGAACCTCGTTCCCAACACGACAACTCCGGAAAAATTATTCAGGAATGGGTGAAAGAGATGGCTGTCTATGTAAAATCCATTGATAGCATGCATTTGCTGGAAGTAGGACTTGAAGGGTTCTATGGTGAAACAATGCCAGAAAAGAAACAATTCAATCCTGGAGGATACCAAGTTGGCACTGATTTCATTTCTAACAACCAAGTTCCCGAAATCGATTTTGCCACCATGCATCTCTACCCTGATCAATGGTTGTCAAACTCAAACGAAGTGGCTCAGGCTGCATTTGTTGACAAATGGGTACAAGCACATATTCAAGACTCAAAAAATGTTCTAGGAAAGCCCATTGTTGTTGGCGAGTTTGGCAAGTCTTTAAAGTCATATAGCTTAGAAGAAAGGGACAGTTACTTAAGAAAATTGTATGATGCAATATACAGTAGTGCTAGTAGTGGGGGACCATGTGCGGGTGGCCTTTTTTGGCAGCTTATGGCTCAAGGAATGGATAGCTTTCGAGATGGATATGAAGTTATCTTGGAGGAGAGTCCTTCAACTACCAGAATTATAGATCAACAATCTCACAAAATGTCAAGTCTTGCATAG 1425 0.4049 MYHFPQRNKTENDAFQNSLNVIHLHTAKNKLSNSSPSQKLCLPHRLSYSQFLAFTFLLGLIDMEWRNECLKNMVLIAFMVTLVVVQHVKGKEGDSIHDSLHIGGFVQRNGTYFILNKKHFYFNGFNAYWLMYMASDPSTRSKVTTTLQQASNHGLTVARTWAFSDGVYRALQVSPGSYDEKVFRGLDFVIAEAGKYGVRLILSLVNNWKEFGGKNQYVKWVSEHGEYLNGEDDFFTHPVVKQYYKNHIKAVLTRRNTITQVAYKDDPAIFAWELMNEPRSQHDNSGKIIQEWVKEMAVYVKSIDSMHLLEVGLEGFYGETMPEKKQFNPGGYQVGTDFISNNQVPEIDFATMHLYPDQWLSNSNEVAQAAFVDKWVQAHIQDSKNVLGKPIVVGEFGKSLKSYSLEERDSYLRKLYDAIYSSASSGGPCAGGLFWQLMAQGMDSFRDGYEVILEESPSTTRIIDQQSHKMSSLA* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03844 474 FunFam Mannan endo-1,4-beta-mannosidase 6 102 474 - -
Rops8g03844 474 Gene3D Glycosidases 103 474 - -
Rops8g03844 474 PANTHER - 72 473 IPR045053 GO:0004553
Rops8g03844 474 SUPERFAMILY (Trans)glycosidases 105 464 IPR017853 -
Rops8g03844 474 Pfam Cellulase (glycosyl hydrolase family 5) 120 411 IPR001547 GO:0004553|GO:0071704
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03844 Rops-Chr8 79240846 79245903 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03844 73 471 Glycoside Hydrolase AT5G66460 56.608 1.45e-161 462
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03844 K19355 - gmx:100787923 688.337