Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03827 ATGGTGGGGTCGGTGAGGAGATGCACTTGCAAATGGGTTGGATGTGAGGCATGTAAAAGGGCGCAAGCAATTTTATCCGAAAGCGAAAACCCTAAAGTCTCCCGTCACGCCACAATCGCTCTCCCGCGTTTGACTCACCTTCGGCTTCTTTGCAACGGGATCAGGTGCTCGTCGTTCAGCATGGCAGGGACTGAAACCAAAAAAACCGTCGCGAAGAAATCTGGTGCGAAGAAGAAGGAGGTGAAGAAAGAGACTGGCTTAGGACTCACGCATCGGAAGGCTGAAAACTTTGGAGAGTGGTATTCCGAGGTTGTTGTTAATGCGGAAATGATTGAGTACTATGATATTTCTGGTTGCTATATTCTTAGACCTTGGTCAATGGCAATTTGGGAGATCTTGCAAGAATTTTTTGATCCAGAAATAAAGAAAATGAAGATCAAGAACTGCTACTTCCCTTTGTTTGTGTCTCCTGGAGTTTTGCAAAAGGAGAAGGACCATGTTGAGGGATTCGCTCCAGAGGTTGCTTGGGTGACAAAATCTGGGGAATCTGATTTAGAAATTCCTATTGCTATTCGTCCAACTAGTGAAACTGTCATGTATCCCTACTACTCTAAGTGGATAAGGGGACACCGTGACTTGCCTCTGAAGCTTAATCAGTGGTGCAATGTTGTTAGATGGGAGTTCAGCAATCCCACACCGTTCATCAGGAGTCGAGAGTTTCTTTGGCAGGAAGGACACACTGCTTTTGCAACAAAGGAGGAAGCGGATGCAGAGGTTCTTGAAATATTGGAATTATATAGGCGTATATACGAAGAGTATTTGGCAGTTCCTGTCTTTAAGGGTAAGAAAAGTGAGCTTGAGAAGTTTGCTGGTGGACTTTATACTACCAGTGTGGAGGCATTTATTCCAAACACTGGTCGTGGTATACAAGGTGCGACTTCTCATTGTCTGGGCCAAAATTTTGCTAAAATGTTTGAGATAAACTTTGAAAATGACAAGGGAGAGAAAGCAATGGTCTGGCAGAACTCATGGGCGTATAGTACTCGAACTATTGGGGTAATGGTGATGGTTCATGGTGATGACAAGGGATTGGTGCTACCTCCGAAAGTAGCATCAGTTCAAGTCATTGTGATTCCTGTGCCGTACAAAGATGCTGATACTCAAGGAATCTATGATGCCTGTTCTGCAACTGTGAGTATGTTGTGTGAAGCTGGTATTCGTGCTGAGTCAGATTCCAGAGATAACTATTCTCCTGGATGGAAGTATTCTCACTGGGAAATGAAAGGTGTTCCTCTAAGAATTGAAATTGGGCCAAAGGATTTAGCAAATAAGCAGGTTCGTGCTGTTCGACGTGATAATGGAGCAAAAATAGACATTGCTAGTGCTGTTTTGGTTGAGGAAGTAAAAAAGTTGCTTGATAATATTCAACAGAATCTGTTTGATGTTGCAAAACAAAAACGAGATGAATGCATTCAGGTCATTCATACATGGGATGAATTTGTACAAGCTTTGAACCAAAGAAAGATGATCTTAGCTCCCTGGTGTGATGAGAAGGAAGTGGAAGCAGATGTCAAAGCAAGGACAAAGGGTGAGATGGGAGCAGCTAAGACTCTTTGTAGTCCCTTTGATCAGCCAGAGCTCCCAGAAGGCACCAAGTGCTTTGCTTCTGGAAAGCCTGCGACGAAGTGGACATACTGGGGCAGAAGTTACTAG 1713 0.439 MVGSVRRCTCKWVGCEACKRAQAILSESENPKVSRHATIALPRLTHLRLLCNGIRCSSFSMAGTETKKTVAKKSGAKKKEVKKETGLGLTHRKAENFGEWYSEVVVNAEMIEYYDISGCYILRPWSMAIWEILQEFFDPEIKKMKIKNCYFPLFVSPGVLQKEKDHVEGFAPEVAWVTKSGESDLEIPIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKEEADAEVLEILELYRRIYEEYLAVPVFKGKKSELEKFAGGLYTTSVEAFIPNTGRGIQGATSHCLGQNFAKMFEINFENDKGEKAMVWQNSWAYSTRTIGVMVMVHGDDKGLVLPPKVASVQVIVIPVPYKDADTQGIYDACSATVSMLCEAGIRAESDSRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANKQVRAVRRDNGAKIDIASAVLVEEVKKLLDNIQQNLFDVAKQKRDECIQVIHTWDEFVQALNQRKMILAPWCDEKEVEADVKARTKGEMGAAKTLCSPFDQPELPEGTKCFASGKPATKWTYWGRSY* 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03827 570 Pfam tRNA synthetase class II core domain (G, H, P, S and T) 189 355 IPR002314 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Rops8g03827 570 PRINTS Prolyl-tRNA synthetase signature 189 200 IPR002316 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Rops8g03827 570 PRINTS Prolyl-tRNA synthetase signature 148 166 IPR002316 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Rops8g03827 570 PRINTS Prolyl-tRNA synthetase signature 219 227 IPR002316 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Rops8g03827 570 PRINTS Prolyl-tRNA synthetase signature 229 240 IPR002316 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Rops8g03827 570 FunFam Bifunctional glutamate/proline--tRNA ligase 89 367 - -
Rops8g03827 570 Pfam Anticodon binding domain 374 470 IPR004154 -
Rops8g03827 570 Pfam Prolyl-tRNA synthetase, C-terminal 497 570 IPR016061 GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433
Rops8g03827 570 SUPERFAMILY Class II aaRS and biotin synthetases 95 361 IPR045864 -
Rops8g03827 570 Gene3D - 368 488 IPR036621 -
Rops8g03827 570 FunFam bifunctional glutamate/proline--tRNA ligase 368 488 - -
Rops8g03827 570 Gene3D - 491 570 IPR017449 GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433
Rops8g03827 570 CDD ProRS_anticodon_zinc 363 570 - -
Rops8g03827 570 NCBIfam proline--tRNA ligase 92 570 IPR004499 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Rops8g03827 570 SUPERFAMILY Class II aaRS ABD-related 362 489 - -
Rops8g03827 570 Coils Coil 465 485 - -
Rops8g03827 570 CDD ProRS_core_arch_euk 96 357 IPR033721 -
Rops8g03827 570 Hamap Proline--tRNA ligase [proS]. 90 570 IPR004499 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Rops8g03827 570 SUPERFAMILY C-terminal domain of ProRS 493 570 IPR017449 GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433
Rops8g03827 570 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 129 367 IPR006195 -
Rops8g03827 570 Gene3D Bira Bifunctional Protein; Domain 2 90 367 IPR045864 -
Rops8g03827 570 FunFam Proline--tRNA ligase, cytoplasmic 491 570 - -
Rops8g03827 570 PANTHER PROLYL-TRNA SYNTHETASE 65 570 IPR004499 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Rops8g03827 570 SMART ProRS_C_1_2 497 570 IPR016061 GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03827 Rops-Chr8 78964676 78971177 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03827 K01881 - gmx:100782067 991.875