Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03816 ATGAGAACTCATGCTAGATTTATCATTTCTCGTTATCTTTCTCAGTTGCAGAAGCAATTCGAATCGAAGTCCCAACTCCCACGCCCAAATTTCAGGCTTCGTCATCCATTTTTGCTTCGTTTTTACTCTACTGAAGTGCAACCTCAACTGTCCCCGGACCTCTTGAACATAATGGAACAAAGACTCTCTGCTATTGAGTACAGGACTGCTTGTCTTAACAATCTTCTAAATCAGCCAGAAGTGTCACCATCAGAGTATGCAAGAGCTAATAAGGAGCTTCGAAAGCTGAGTGGTTCTGTGGAGCTTATTAATGAATTGAGGACCAAACAGAAGGAAATTGACAGCTTGAAGTCACTAATGGCTGAATGTTCTGAAGATAAAGACATGCTTAATATGGCAACAGAGGAAAGGGGCCAGGCCATAGAGGAAGAAAGAAGACTACAAAATTTGCTGCTGAAGTCGTTACTTCCTAAGGATGATGCTGATGAAAGGGATTGCATTTTGGAGGTACGAGCAGGCACCGGTGGAGAGGAGGCTTCCTTGTTTGCAATGGATATCTTTAAAATGTATGAGAAGCATGCTCACAAGAAAGGCTGGAAGTTTGATGTAGTAGATATAGCTCAATCTGATCTTAAAGGATACAAGGAGGCTAGCGCAGCAATTGCAGGAGTCGGCGTTTTTGGGAAACTAAAATTTGAGAGTGGAATTCATAGAGTACAGCGAGTGCCTGTGACAGAAAAGTTGGGACGTGTTCATACCAGTGCTGTTTCTGTTGCAATCCTCCCTCAAGCTGATGAGGTCGATGTTCAATTGAAGAATGAAGACTTGAAAATCGATACCTATAGATCTGGTGGTTCAGGTGGTCAGCATGCAAATACAACCAACAGTGCTGTTAGAGTAACTCATATTCCAACAGGGATTGTGGTTGCTATACAAGATGAGCGGTCTCAGCATATGAACAAAGCCAAAGCTCTCAAGGTACTGTGTGCAAAGCTATATGAAATGGAAAGGTTCAGACTTCAGAGTAGTCGATCAAAGCTTCGATCTGAGCAGATTGGTAGTGGGGACAGATCTGAACGCATCCGAACATACAATTTTCCTCAAGGCCGTGTAACTGATCATAGAGTTGGTATCACTTATCACTCGATAGGCGATGTGATGGAAGGAGAGAATCTTGATATCTTCATTGATGCTCTTCTGTTGCAAGAAGAAATGGATGCAATTGCAACTTTTAGTTCTTCTCAGAGCTGTGGACCCAGGGATGGGCAAGACATGGGAAAGAGGAAAGGGTTCTAG 1296 0.4298 MRTHARFIISRYLSQLQKQFESKSQLPRPNFRLRHPFLLRFYSTEVQPQLSPDLLNIMEQRLSAIEYRTACLNNLLNQPEVSPSEYARANKELRKLSGSVELINELRTKQKEIDSLKSLMAECSEDKDMLNMATEERGQAIEEERRLQNLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAMDIFKMYEKHAHKKGWKFDVVDIAQSDLKGYKEASAAIAGVGVFGKLKFESGIHRVQRVPVTEKLGRVHTSAVSVAILPQADEVDVQLKNEDLKIDTYRSGGSGGQHANTTNSAVRVTHIPTGIVVAIQDERSQHMNKAKALKVLCAKLYEMERFRLQSSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITYHSIGDVMEGENLDIFIDALLLQEEMDAIATFSSSQSCGPRDGQDMGKRKGF* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03816 431 Pfam PCRF domain 67 258 IPR005139 GO:0006415
Rops8g03816 431 SUPERFAMILY Release factor 72 403 IPR045853 -
Rops8g03816 431 Hamap Peptide chain release factor 1 [prfA]. 58 412 IPR004373 GO:0006415|GO:0016149
Rops8g03816 431 Gene3D - 168 396 - -
Rops8g03816 431 PANTHER LD18447P 55 413 - -
Rops8g03816 431 Pfam RF-1 domain 265 375 IPR000352 GO:0003747|GO:0006415
Rops8g03816 431 Gene3D - 53 160 - -
Rops8g03816 431 SMART PCRF_a_2 118 233 IPR005139 GO:0006415
Rops8g03816 431 Coils Coil 99 126 - -
Rops8g03816 431 MobiDBLite consensus disorder prediction 412 431 - -
Rops8g03816 431 FunFam Peptide chain release factor 1 264 359 - -
Rops8g03816 431 FunFam Peptide chain release factor 1 162 272 - -
Rops8g03816 431 Gene3D - 264 359 - -
Rops8g03816 431 NCBIfam peptide chain release factor 1 59 412 IPR004373 GO:0006415|GO:0016149
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03816 Rops-Chr8 78840550 78846956 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03816 K02835 - gmx:100800412 692.189