Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03788 ATGCAGAAGCAAAGGTTGGAGGGTAAGGTGGCTCTCATCACCGGGGCAGCCAGTGGGATTGGGGAAGAGACTGTGAAACTGTTTGCTGAAAATGGAGCATTTGTTGTTGCAGCAGACGTTCAAGATGAACTGGGTAGTCAAGTTACAGCTTCAATAGGGTCAGATAGAGTGACATACCACCATTGTGATGTGAGAGATGAGAATCAGGTTGAAGAAACAATCAATTTCACTTTGGAAAAACACGGTCGCCTAGATATAGTGTTCAGTAATGCTGGAATAGGAGGCTCATCATCTGGAATCCTTGACCTTGATCTGAATGAATTTGACAACACCATGGCTACAAATGTTCGTGGTGCTGCTGCTATGATTAAGCATGCTGCTCGTGCCATGGTTTCCAAAAGCATCCGTGGATCCATTATATGCACTGCCAGCGTGGCAGCTTCCATTGGCGGAGCGGGTCCTCATGGTTATACCACATCAAAACATGCTCTTTTGGGACTGGTAAGATCAGCATGTAATGAACTTGGTGCTTATGGAATCAGAGTTAATAGCATCTCCCCTTATGGAGTTGCCACACCTCTTACGTGTAAAGGTTACAATTGTGAACCTCATGAATTTGAAGCTAGCATTTGTTCTCACGCTAATCTGAAGGGTATTGTGTTGAAAGCTCTGCATATCGCTGAAGCTGCTTTATTTCTTGCTTCTGATGAATCTCTTTACATCAGTGGTCACAACTTGGTAGTTGATGGTGGCTTCTTGGTGGTTAATCGTTCTTCTTCTGCCAAACCTGTTTCTACCTAG 801 0.4432 MQKQRLEGKVALITGAASGIGEETVKLFAENGAFVVAADVQDELGSQVTASIGSDRVTYHHCDVRDENQVEETINFTLEKHGRLDIVFSNAGIGGSSSGILDLDLNEFDNTMATNVRGAAAMIKHAARAMVSKSIRGSIICTASVAASIGGAGPHGYTTSKHALLGLVRSACNELGAYGIRVNSISPYGVATPLTCKGYNCEPHEFEASICSHANLKGIVLKALHIAEAALFLASDESLYISGHNLVVDGGFLVVNRSSSAKPVST* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03788 266 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 254 IPR036291 -
Rops8g03788 266 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 IPR002347 -
Rops8g03788 266 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 176 IPR002347 -
Rops8g03788 266 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 137 145 IPR002347 -
Rops8g03788 266 Pfam Enoyl-(Acyl carrier protein) reductase 15 252 - -
Rops8g03788 266 PRINTS Glucose/ribitol dehydrogenase family signature 157 176 IPR002347 -
Rops8g03788 266 PRINTS Glucose/ribitol dehydrogenase family signature 178 195 IPR002347 -
Rops8g03788 266 PRINTS Glucose/ribitol dehydrogenase family signature 131 147 IPR002347 -
Rops8g03788 266 PRINTS Glucose/ribitol dehydrogenase family signature 82 93 IPR002347 -
Rops8g03788 266 PRINTS Glucose/ribitol dehydrogenase family signature 10 27 IPR002347 -
Rops8g03788 266 PRINTS Glucose/ribitol dehydrogenase family signature 216 236 IPR002347 -
Rops8g03788 266 PANTHER SHORT-CHAIN DEHYDROGENASE REDUCTASE 2 258 - -
Rops8g03788 266 Gene3D - 1 260 - -
Rops8g03788 266 FunFam Short-chain dehydrogenase reductase 1 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03788 Rops-Chr8 78506783 78507739 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03788 6 251 Acyl Lipid Metabolism Gene Families AT3G55290 30.888 2.01e-23 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03788 - - gmx:100811279 421.394