Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03786 ATGTGTTGGACCATCGCGAGGTTGGCCATGAAAGATGAAGGTGGAGTAGGGGGAGGTGTAGAGGATGTCGAAGATCCAGTGGTGGAGGTTGGTTGCGATGGAAAATACAGAACTAATGATAGTGCAATCTTTAGGAATTGCGGTGGAAGAGAAAGAGAGAATAGAAGCAAGAGCAAAATTTTCAGAGTTCGAAGGGTAGCTCATCAAGGAACGGAAGAGCCATATCATCAAATGTCCAAACAAAGGTTGCAGGGTAAGGTGGCTATTGTCACCGGTGGAGCCAGCGGAATAGGAGCAGAAGCAGTGAGATTATTCGTGGAAAAAGGGGCATCCGTGGTTATAGCAGACATTCAAGACGAATTGGGTCACCAGTTTGCAACTTCAATTGGCTTAGATAAAGTGAGTTACCACCATTGTGACGTCAGAGATGAGAATCAAGTTGAGGAAACTGTAGCTTTCACCTTGGACAAATATGACAGCTTGGACATCTTGTTCAGCAACGCTGGGATCGCAGGTCCTTTGTCTAGCATACTTGAGTTTGATCTGAATGAATTTAACAACACTTTGGCTGTGAATCTTCGGGGTGTAGCAGCAACTATCAAGCACGCTGCACGAGTCATGGTGGCTAGAAAGATACGTGGATCCATAATTTGCACAGCTAGTGTGGCTGGTTCGTGTGCTGGATGTGCAGGTCATGATTATACCGCATCCAAACATGGTCTTATAGGCCTTGTCCGCTCCACATGTAGTGAGCTTGGAGCTTATGGGATCAGAGTTAATTCCATCTCACCATATGGAATTGCCACACCTCTTGCATGTGGAGCACTTGATAAGGAGCCTGGTGAACTTGAAGCTATTGGCCTTGCAGTTGCCAATTTGCAGGGAATTACATTGAAAACTACCCATATAGCAGAAGCTGCTTTGTTTCTTGCCTCTGATGAATCGGCTTATATTAGTGGACACAACTTGGTGGTCGATGGAGGCTTCTCTGTCATTAATAGTTGTTTTCCTAGTATTAAAAAATAA 1026 0.4483 MCWTIARLAMKDEGGVGGGVEDVEDPVVEVGCDGKYRTNDSAIFRNCGGRERENRSKSKIFRVRRVAHQGTEEPYHQMSKQRLQGKVAIVTGGASGIGAEAVRLFVEKGASVVIADIQDELGHQFATSIGLDKVSYHHCDVRDENQVEETVAFTLDKYDSLDILFSNAGIAGPLSSILEFDLNEFNNTLAVNLRGVAATIKHAARVMVARKIRGSIICTASVAGSCAGCAGHDYTASKHGLIGLVRSTCSELGAYGIRVNSISPYGIATPLACGALDKEPGELEAIGLAVANLQGITLKTTHIAEAALFLASDESAYISGHNLVVDGGFSVINSCFPSIKK* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03786 341 FunFam Short-chain dehydrogenase reductase 76 334 - -
Rops8g03786 341 PANTHER SHORT-CHAIN DEHYDROGENASE REDUCTASE 79 334 - -
Rops8g03786 341 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 221 249 IPR020904 GO:0016491
Rops8g03786 341 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 234 253 IPR002347 -
Rops8g03786 341 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 159 170 IPR002347 -
Rops8g03786 341 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 214 222 IPR002347 -
Rops8g03786 341 PRINTS Glucose/ribitol dehydrogenase family signature 208 224 IPR002347 -
Rops8g03786 341 PRINTS Glucose/ribitol dehydrogenase family signature 159 170 IPR002347 -
Rops8g03786 341 PRINTS Glucose/ribitol dehydrogenase family signature 255 272 IPR002347 -
Rops8g03786 341 PRINTS Glucose/ribitol dehydrogenase family signature 87 104 IPR002347 -
Rops8g03786 341 PRINTS Glucose/ribitol dehydrogenase family signature 293 313 IPR002347 -
Rops8g03786 341 PRINTS Glucose/ribitol dehydrogenase family signature 234 253 IPR002347 -
Rops8g03786 341 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 84 331 IPR036291 -
Rops8g03786 341 Gene3D - 73 340 - -
Rops8g03786 341 Pfam Enoyl-(Acyl carrier protein) reductase 92 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03786 Rops-Chr8 78473281 78483468 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03786 73 331 Acyl Lipid Metabolism Gene Families AT3G55290 29.520 1.25e-22 94.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03786 - - gmx:100798299 423.32