Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Rops8g03737 | ATGACTCCTTCGCGTCGCAACAGCAATGGTCGATCACCGCTCGTTAATCCACAGCGACAAATCACTTCTTTCTTCTCCAAATCCACTCCTTCTCCCACTCTCTCCAAAACTAACCAAAAACTAAACCCTAATCCCATTCCAGACCCTAACCCTAGCCCTACCACGCCTTCACCTATCGTTCCCAAACCTCACAAGCCGGTTCTCCTAATCGGTGCTTCTTCTTCGCCTTCTCTCTTCGGTGAAGAGGTGGTTGGAAGAAGGATCAAGGTTTATTGGCCTTTGGATAAAGCCTGGTACGAAGGTTATGTCAAATCCTTCGATAAAGTTACCTCCAAGCATTTGGTTCGTTACGACGATGACGAGGAGGAATCCATTGACCTTTCCAAAGAGAAGATCGAGTGGTCTCAAGATACCTCTTCGAAGAAGCTTAAACGGTTGCGTCGCGGCTTCCCCGCTATTAGGAAGATGGTGATTGAGGAGGATGATGAGGTAGAAAAAACTCGCAAAGAGAGTAATAACGATGACGATGGTGATGATGATGATGACGATTCAAATGATGAAGATTGGGGGAAGAATGGTGTAGCTGAGGATGCTGGTGATGGTGAAGATGAAGATACGGAGTTAGAGGAAGAAGATGATGTAGCAGAGAGGGCTAAAGGAAAGCCTAGCAAAAAGGTTCAGCCTAGAAAAAGGAAACTAGGTGGAGCAGAGAAAGTGGAGCCAGTGAAAAAGAGCAAGAGTGGAGTGGAAGTTGGTAAGGGAGGTTTCAAGTTCTCAGTATTGGAGCCTGCGAGTAATTTGGATATTATAAAGACACCTGCTGTTGACAATGTTGCAGCTGGTGATGCCTCTGAAAGATTTGCACCTCGTGAAGCTCAGAAATTGCGCTTTCTGAGAGAAGATCGCAGGGATGCCAAGCGAAGGCGCCCAGCAGATGATAATTATGATTCAAGAACTCTCTACTTGCCTCCTGATTTCTTAAGGAGTTTGTCAGATGGTCAGAAACAATGGTGGGAGTTCAAGTCAAAGCATATGGATAAAGTTTTGTTTTTCAAGATGGGTAAATTTTATGAGCTTTTTGAGATGGATGCACATGTAGGAGTAAAAGAGCTTGACTTGCAGTATATGAAGGGAGAACAACCTCATTGTGGATTTCCGGAGAAGAATTTCTCAATGAATGTGGAGAAACTGGCTAGGAAGGGTTATCGAGTTCTTGTTGTAGAGCAGACTGAAACACCTGAACAGCTGGAACTTCGTCGCAAGGAGAAAGGCTCTAAAGATAAGGTTGTGAGACGTGAAATATGTGCAGTGGTTACAAAAGGCACATTAACGGAGGGGGAGTTGCTGTCTGCAAACCCTGAAGCTGCATATTTAATGGCACTGACTGAGCACCACGAAAACCATTCAAATGAAACTTCAGAGCGTACTTATGGTGTTTGTATGGTTGATGTTGCCACAAGCAGGGTCATTCTTGGACAGTTTAAGGATGACTTGGAGTGCAGTGCCCTGTGCTGTATCTTGTCTGAGATCAGGCCAGTTGAAATTGTGAAACCAGCTAAACTGCTGAGTGCTGAAACAGAGAGAGTACTGCTGAAGCATACCAGAAATCCTCTGGTGAATGAATTAGTTCCAATTGTGGAATTCTGGGATGCTGACAAAACTATGGATCAATTGAAGAGAATTTACAGGCATGCTAATGATGTTAATGTTGAAGATAGTGGGTTAGATTGCCTGCCGGATGTTTTACAGGATCTGGTGAAAACAGGTGATGACAGTAGAAGTGCACTTTCCGCACTAGGTGGTGCTCTTTATTATCTGAAGCAGGCTTTCCTAGATGAGAGGTTGCTTAGATTTGCACAGTTTGAGTTGCTTCCATGCTCTGGTTTCTGCGGTCTTGCTTCAAAACCATACATGGTTCTTGATGCAGCAGCCATGGAGAATCTTGAGATTTTTGAGAATAGCAGAAATGGAGATACTTCAGGCACACTCTATGCCAAATTAAACCAATGTGTTACTGCATTTGGAAAGAGATTGCTAAAGACATGGCTTGCAAGACCATTACGTCATGTAGAGTCAATTAAGGAACGCCAGGAAGCTGTTGCAAGTTTAAAGGGAGATAATCTACCTTCTGCCCTAGAATTTCAAAAAGCATTATCAAAGCTACCTGATATGGAGCGGTTGCTTGCACTGATCTTCTCTACTAGTGAAGCTAGTGGAAGGAATGCTAATAAAGTGGTTCTGTATGAGGATGCAGCAAAGAAACAGCTGCAAGAGTTTATTTCAGCTCTGCGTGGTTGTGAACTAATGGCACAAGCATGCTCTTCACTCACTGTCATTTTGAATGGTGTCAAATCTAGACAACTTAATCATCTGTTAACTCCTGGTAAAGGTCTTCCTAATATTTGCATGGATCTTAATCATTTCAAGGATGCCTTTGATTGGGTGGAAGCCAATAACTCTGGGCGTATAATACCTTGTGAAGGAGTTGACATAGAATATGACACAGCCTGTAAGGCAGTTAAAGAGATTGAGTCCAGTTTATTAAAGCATCTCAAGGAACAAAGGAAATTACTTGGAGACACATCAATCACTTATGTCAATATAGGAAAGGAGGCATACCTATTGGAAGTACCAGAAAAATTGTCTGGGAATATTCCTGGGGATTATGAGCTGCGTTCATCCAGAAAAGGCTTCTTTAGGTACTGGACTCCAGATATTAAAATCTTTTTAAGAGAGCTCTCCCGAGCTGAATCTGAAAAGGAGTCCTTATTGAAAAGTACATTGCAGAGATTAATTGGGCATTTTTGTGAACATCACACTCAGTGGAAGCAGTTGGTGTCTACAACCGCTGAATTGGATGTTTTGATCAGTTTAGCTATTGCCAGTAACTACCATGAAGGACCATCCTGCAGACCAAGTTTTGTCAGCCCATTATGTACAAAAGAAGCTCCATACCTCTATGCTACAAGTTTGGGACACCCAGTCCTTAAGAGTGATTCCTTAGGCAAGGGTGCCTTTGTACCCAATGACATAGCCATTGGTGGTCCACATCATGCTAGCTTTATTCTCCTAACAGGTCCTAACATGGGTGGGAAGTCAACCCTTCTTCGCCAAGTTTGCTTGGCAGTCATTTTGGCCCAGGTAGGGGCTGATGTCCCAGCAAAAAGTTTTGATTTGTCACCTGTTGACCGAATTTTTGTTCGTATGGGTGCCAAAGATCATATCATGGCTGGTCAAAGTACATTTTTAACTGAGCTTTCAGAAACTGCAACAATGCTGTCGTCAGCCACTCGTAATTCATTGGTCGCTCTGGATGAGCTTGGGCGGGGGACCTCAACTTCTGATGGACAAGCCATTGCGGAATCAGTATTAGAACATCTTGTGCGGAAGGTGCAGTGTCGAGGATTGTTTTCTACACACTATCATCGATTAGCTATGGATTATCTCCAAGATCCTAAGGTCTGTCTCTGCCACATGGCATGCCAAGTGGGTGGTGGGATTGCAGGTTTAGACGAAGTCACCTTTCTTTACAGGCTGACCCCTGGTGCTTGCCCCAAGAGCTATGGTGTTAATGTTGCTCGGTTAGCTGGACTTCCAACCTCTGTGCTTCAGAAGGCTGCTGCCAAGTCCAGAGAATTTGAGGCCACTTATGGTAAATGCAGAAAGTTGTCGTCTGAATCAAAATCTTCCAATCAAAATTGGGTCGATGAGATAATTGTTATGATACAAAAATTTAACAGTGCTGCTACAAATTTGAGTTGCCAGGAAACCATTGGCTGTAGTTTCCTAAGTGAGCTTCAGGAGAAAGCAAGAGAACTACTGCAACGATGTTAA | 3834 | 0.4351 | MTPSRRNSNGRSPLVNPQRQITSFFSKSTPSPTLSKTNQKLNPNPIPDPNPSPTTPSPIVPKPHKPVLLIGASSSPSLFGEEVVGRRIKVYWPLDKAWYEGYVKSFDKVTSKHLVRYDDDEEESIDLSKEKIEWSQDTSSKKLKRLRRGFPAIRKMVIEEDDEVEKTRKESNNDDDGDDDDDDSNDEDWGKNGVAEDAGDGEDEDTELEEEDDVAERAKGKPSKKVQPRKRKLGGAEKVEPVKKSKSGVEVGKGGFKFSVLEPASNLDIIKTPAVDNVAAGDASERFAPREAQKLRFLREDRRDAKRRRPADDNYDSRTLYLPPDFLRSLSDGQKQWWEFKSKHMDKVLFFKMGKFYELFEMDAHVGVKELDLQYMKGEQPHCGFPEKNFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVRREICAVVTKGTLTEGELLSANPEAAYLMALTEHHENHSNETSERTYGVCMVDVATSRVILGQFKDDLECSALCCILSEIRPVEIVKPAKLLSAETERVLLKHTRNPLVNELVPIVEFWDADKTMDQLKRIYRHANDVNVEDSGLDCLPDVLQDLVKTGDDSRSALSALGGALYYLKQAFLDERLLRFAQFELLPCSGFCGLASKPYMVLDAAAMENLEIFENSRNGDTSGTLYAKLNQCVTAFGKRLLKTWLARPLRHVESIKERQEAVASLKGDNLPSALEFQKALSKLPDMERLLALIFSTSEASGRNANKVVLYEDAAKKQLQEFISALRGCELMAQACSSLTVILNGVKSRQLNHLLTPGKGLPNICMDLNHFKDAFDWVEANNSGRIIPCEGVDIEYDTACKAVKEIESSLLKHLKEQRKLLGDTSITYVNIGKEAYLLEVPEKLSGNIPGDYELRSSRKGFFRYWTPDIKIFLRELSRAESEKESLLKSTLQRLIGHFCEHHTQWKQLVSTTAELDVLISLAIASNYHEGPSCRPSFVSPLCTKEAPYLYATSLGHPVLKSDSLGKGAFVPNDIAIGGPHHASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAKSFDLSPVDRIFVRMGAKDHIMAGQSTFLTELSETATMLSSATRNSLVALDELGRGTSTSDGQAIAESVLEHLVRKVQCRGLFSTHYHRLAMDYLQDPKVCLCHMACQVGGGIAGLDEVTFLYRLTPGACPKSYGVNVARLAGLPTSVLQKAAAKSREFEATYGKCRKLSSESKSSNQNWVDEIIVMIQKFNSAATNLSCQETIGCSFLSELQEKARELLQRC* | 1278 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Rops8g03737 | 1277 | MobiDBLite | consensus disorder prediction | 198 | 212 | - | - | |
| Rops8g03737 | 1277 | Gene3D | - | 81 | 134 | - | - | |
| Rops8g03737 | 1277 | PIRSF | Msh6 | 2 | 1264 | IPR017261 | GO:0006298|GO:0030983 | |
| Rops8g03737 | 1277 | Gene3D | DNA repair protein MutS, domain I | 290 | 450 | IPR016151 | GO:0005524|GO:0006298|GO:0030983 | |
| Rops8g03737 | 1277 | Pfam | MutS domain V | 1023 | 1213 | IPR000432 | GO:0005524|GO:0006298|GO:0030983 | |
| Rops8g03737 | 1277 | SMART | DNAend | 658 | 999 | IPR007696 | GO:0005524|GO:0006298|GO:0030983 | |
| Rops8g03737 | 1277 | SUPERFAMILY | DNA repair protein MutS, domain III | 641 | 964 | IPR036187 | - | |
| Rops8g03737 | 1277 | MobiDBLite | consensus disorder prediction | 157 | 173 | - | - | |
| Rops8g03737 | 1277 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 977 | 1214 | IPR027417 | - | |
| Rops8g03737 | 1277 | MobiDBLite | consensus disorder prediction | 1 | 43 | - | - | |
| Rops8g03737 | 1277 | FunFam | DNA mismatch repair protein | 970 | 1244 | - | - | |
| Rops8g03737 | 1277 | FunFam | DNA mismatch repair protein | 288 | 451 | - | - | |
| Rops8g03737 | 1277 | Pfam | MutS domain III | 644 | 959 | IPR007696 | GO:0005524|GO:0006298|GO:0030983 | |
| Rops8g03737 | 1277 | Coils | Coil | 906 | 926 | - | - | |
| Rops8g03737 | 1277 | SMART | TUDOR_7 | 80 | 138 | IPR002999 | - | |
| Rops8g03737 | 1277 | Pfam | MutS domain I | 334 | 446 | IPR007695 | GO:0005524|GO:0006298|GO:0030983 | |
| Rops8g03737 | 1277 | Pfam | MutS family domain IV | 828 | 918 | IPR007861 | GO:0005524|GO:0006298|GO:0030983 | |
| Rops8g03737 | 1277 | Gene3D | - | 970 | 1249 | IPR027417 | - | |
| Rops8g03737 | 1277 | MobiDBLite | consensus disorder prediction | 1 | 66 | - | - | |
| Rops8g03737 | 1277 | PANTHER | DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER | 334 | 1243 | IPR045076 | GO:0005524|GO:0006298|GO:0030983|GO:0140664 | |
| Rops8g03737 | 1277 | FunFam | DNA mismatch repair protein | 804 | 935 | - | - | |
| Rops8g03737 | 1277 | Gene3D | - | 638 | 959 | - | - | |
| Rops8g03737 | 1277 | Gene3D | - | 804 | 935 | - | - | |
| Rops8g03737 | 1277 | MobiDBLite | consensus disorder prediction | 230 | 247 | - | - | |
| Rops8g03737 | 1277 | Gene3D | MutS, connector domain | 455 | 631 | IPR036678 | GO:0005524|GO:0006298|GO:0030983 | |
| Rops8g03737 | 1277 | MobiDBLite | consensus disorder prediction | 157 | 248 | - | - | |
| Rops8g03737 | 1277 | CDD | Tudor_Agenet_AtEML-like | 84 | 134 | - | - | |
| Rops8g03737 | 1277 | SUPERFAMILY | DNA repair protein MutS, domain II | 452 | 653 | IPR036678 | GO:0005524|GO:0006298|GO:0030983 | |
| Rops8g03737 | 1277 | SMART | mutATP5 | 1019 | 1211 | IPR000432 | GO:0005524|GO:0006298|GO:0030983 | |
| Rops8g03737 | 1277 | SUPERFAMILY | DNA repair protein MutS, domain I | 319 | 442 | IPR016151 | GO:0005524|GO:0006298|GO:0030983 | |
| Rops8g03737 | 1277 | SUPERFAMILY | Tudor/PWWP/MBT | 83 | 125 | - | - | |
| Rops8g03737 | 1277 | Pfam | MutS domain II | 457 | 610 | IPR007860 | GO:0005524|GO:0006298|GO:0030983 | |
| Rops8g03737 | 1277 | MobiDBLite | consensus disorder prediction | 44 | 63 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Rops8g03737 | Rops-Chr8 | 77776170 | 77788340 | Dispersed/Transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Rops8g03737 | K08737 | - | gmx:100811104 | 1986.07 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Rops8g03737 | 8 | 77776170 | 77788340 | Rops8g03737 | 8 | 77776170 | 77788340 | ECH |