Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03698 ATGGCATCTGCACCTTCCATGTCAGTTTCTTTAGAATGTGTGAACGTGTGCAATCTTTGGAGAGGGGATGGAAGTGGAAGATATGACTGTAGTCTTCTATCGTGTGCTTGGAAAGCTCCTAGGGTACTCACTGGGTTTCTTGCCAGCACGGCTCATCCTCATCACTCTTCTTCATCATCCACTTTGAATGGAAGAAATGGAAGAAGGAACCGGTATAATTTTGCATGTGAGGCCTTTAGTGTAGTAGGTTCATATCCTGATGAAGCACTTGATATAATACTTCTTGAAGGATTCTCGAGATCTAGCCTGTCTCGAGTTGCTTTTAGAAGATGGCAGTTATGTTGTTCTTCGACCTTCTCCTCGGATACTGCCAGTGAGTTTTCCCCTGAAAGTTTATGGGAGGATCTTAAACCTGTGATCTCATACCTTTCCTCTACAGAACTGGAATTAGTCCATAATGCATTTATGTTGGCATTTGAAGCTCATGATGGTCAGAAAAGACGCAGTGGTGAACCCTTCATCGTTCATCCAGTTGAGGTTGCACGGATTCTTGGAGAACTTGAACTTGACTGGGAGTCGATTGCTGCTGGATTACTTCATGACACGGTTGAGGATACAAATGTTGTTACTTTTGAGAGGATAGAGGAGGAATTTGGTGCTACTGTGCGCCACATTGTGGAAGGAGAGACTAAGGTGTCGAAGCTGGGAAAGTTGAAGTATAAGAATGAAAATGATTCCGTTCAAGATGTGAAAGCAGAGGATCTTCGGCAAATGTTTCTGGCTATGACAGAGGAGGTTCGTGTTATTATTGTCAAATTAGCAGACAGGTTACATAACATGCGCACTCTATCGCATATGCCTCCACATAAACAGACTAGCATTGCGATGGAGACATTACAAGTATTTGCTCCTTTGGCAAAGTTGCTTGGGATGTATCAAATTAAGTCAGAACTAGAAAATCTATCATTCATGTACACAAATGCTGAAGATTATGCTAAGGTGAAGAGAAGAGTTGCAGACCTATACAAAGAACATGAGAAAGAACTTTTGGAGGCAAACAAAATATTGGTGAAGAAAATCCAAGATGATCAATTCTTAGACCTTTTAACTGTTAAAACGGAAGTCCGTGCTGTATGTAAAGAGCCTTACAGTATCTATAAGGCTGTTCTCAAATCAAAAAGTTTGATCAATGAGATTAACCAAATTGCACAGCTTCGTATTATTATTAAACCAAAGCCATGCATTGGGGTTGGGCCTTTATGCAGTTCGCAGCAGATTTGCTATCATGTTCTGGGGTTGATCCATGGAATCTGGACCCCTATTCCTAGATCTGTGAAGGATTATATTGCAACCCCTAAACCTAATGGCTACCAGAGTCTTCATACCACTGTGATTCCATTTTTGTATGAGAGCATGTTTAGGCTAGAAGTTCAGATTAGAACAGAAGAAATGGATTTGATAGCTGAGAGGGGCATTGCTGCTCATTATAGTGGGAGAGAATTTGTCACTGGCTTAGTTGGAAGTGCGATGCCCAATGGTAAAAGCTCAAGAGGGAAGACAGTGTGTCTTAACAATGCCAACATTGCACTCAGAATTGGCTGGCTCAATGCAATTAGAGAGTGGCAAGAAGAGTTTGTGGGCAACATGAGTTCTAGGGAATTTGTGGACACCATTACAAGAGATCTTTTGGGCAGTCGTGTCTTTGTGTTTACACCCAGGGGAGAGATTAAGAATCTTCCTCAGGGTGCTACTGTCATTGATTATGCTTATATGATACACACTGAAGTTGGCAACAAGATGGTAGCTGCAAAGGTCAACGGTAATCTTGTTTCTCCTGCACGTGTACTCGCAAATGCAGAAGTTGTGGAGATAATCACATATAATGCACTTTCCAGCAAATCAGCTTTTCAGAGGCATAAACAGTGGTTGCAACATGCTAAAACACGTAGTGCGAGACACAAAATAATGAAGTTTCTGAGAGAGCAAGCTGCACGTTCTGCCGCTGAGATCACTACAGAAGCAGTCAATGACTTCGTCACTGATTCTGAAGGGGATAGTGAATCTGAAGAACTGTCAAATGGTTCCAGTGGTTCCAAACAGAAGTTGGGTAAAATGTTCGTGAATGGTGTGGAAATATCAACTCCAGAAAGAAGTGAGACTGTCCCCCAAAGTAAGAATGGAAGTGTTTGGACCCCCAAGGTCAATGGAAAACATAATAAGCATGTGCAGCATGTAAGTTTCAAGGGCAAAGGAGAGATGATGCTACAGGGAGACCATGTTGCCAAGATGATTCAAGTTAACATTCCAAAATATAAGGAAGTCCTGCCAGGTTTAGAAAGTTGGCAAGCCCAGAAAATTGCCTCTTGGCACAATATAGAAGGGCACTCCATCCAATGGTTATCTGTAGTATGCATAGACCGAAGAGGCATGATGGCTGAGGTCACTACGGCATTGGCCACTGCAGACATAACCATATGTTCTTGTGTGGCTGAGATTGATGGAGGAAGGGGAATGGCTGTTATGTTATTTCACGTAGAAGGAAATTTAGAAAATTTGGTGAGTGCTTGCTCTAGAGTAGATTTTATACAGGGCGTTTTGGGATGGTCTACCGGTTGCAGCTGGCCAAGCTTGATGGATGACCGTGGTTTTTTCGAATGCTAG 2661 0.4235 MASAPSMSVSLECVNVCNLWRGDGSGRYDCSLLSCAWKAPRVLTGFLASTAHPHHSSSSSTLNGRNGRRNRYNFACEAFSVVGSYPDEALDIILLEGFSRSSLSRVAFRRWQLCCSSTFSSDTASEFSPESLWEDLKPVISYLSSTELELVHNAFMLAFEAHDGQKRRSGEPFIVHPVEVARILGELELDWESIAAGLLHDTVEDTNVVTFERIEEEFGATVRHIVEGETKVSKLGKLKYKNENDSVQDVKAEDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQTSIAMETLQVFAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVADLYKEHEKELLEANKILVKKIQDDQFLDLLTVKTEVRAVCKEPYSIYKAVLKSKSLINEINQIAQLRIIIKPKPCIGVGPLCSSQQICYHVLGLIHGIWTPIPRSVKDYIATPKPNGYQSLHTTVIPFLYESMFRLEVQIRTEEMDLIAERGIAAHYSGREFVTGLVGSAMPNGKSSRGKTVCLNNANIALRIGWLNAIREWQEEFVGNMSSREFVDTITRDLLGSRVFVFTPRGEIKNLPQGATVIDYAYMIHTEVGNKMVAAKVNGNLVSPARVLANAEVVEIITYNALSSKSAFQRHKQWLQHAKTRSARHKIMKFLREQAARSAAEITTEAVNDFVTDSEGDSESEELSNGSSGSKQKLGKMFVNGVEISTPERSETVPQSKNGSVWTPKVNGKHNKHVQHVSFKGKGEMMLQGDHVAKMIQVNIPKYKEVLPGLESWQAQKIASWHNIEGHSIQWLSVVCIDRRGMMAEVTTALATADITICSCVAEIDGGRGMAVMLFHVEGNLENLVSACSRVDFIQGVLGWSTGCSWPSLMDDRGFFEC* 887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03698 886 FunFam GTP pyrophosphokinase (RelA/SpoT) 559 633 - -
Rops8g03698 886 ProSiteProfiles ACT domain profile. 799 870 IPR002912 -
Rops8g03698 886 PANTHER GTP DIPHOSPHOKINASE RSH1, CHLOROPLASTIC-RELATED 7 879 - -
Rops8g03698 886 SMART RelA_SpoT_2 380 502 IPR007685 GO:0015969
Rops8g03698 886 SUPERFAMILY ACT-like 799 854 IPR045865 -
Rops8g03698 886 Gene3D Hypothetical protein af1432 131 326 - -
Rops8g03698 886 SMART hd_13 169 289 IPR003607 -
Rops8g03698 886 MobiDBLite consensus disorder prediction 716 735 - -
Rops8g03698 886 MobiDBLite consensus disorder prediction 680 701 - -
Rops8g03698 886 Pfam Region found in RelA / SpoT proteins 380 496 IPR007685 GO:0015969
Rops8g03698 886 CDD TGS_RSH 568 626 IPR033655 -
Rops8g03698 886 FunFam GTP pyrophosphokinase RelA 132 327 - -
Rops8g03698 886 Gene3D Beta Polymerase, domain 2 328 482 IPR043519 -
Rops8g03698 886 CDD HDc 171 302 IPR003607 -
Rops8g03698 886 Pfam TGS domain 567 626 IPR004095 -
Rops8g03698 886 Pfam HD domain 154 311 - -
Rops8g03698 886 SUPERFAMILY TGS-like 554 626 IPR012676 -
Rops8g03698 886 MobiDBLite consensus disorder prediction 716 733 - -
Rops8g03698 886 ProSiteProfiles HD domain profile. 173 280 IPR006674 -
Rops8g03698 886 Gene3D - 799 860 - -
Rops8g03698 886 SUPERFAMILY Nucleotidyltransferase 330 501 IPR043519 -
Rops8g03698 886 SUPERFAMILY HD-domain/PDEase-like 137 326 - -
Rops8g03698 886 Gene3D - 560 635 IPR012675 -
Rops8g03698 886 CDD NT_Rel-Spo_like 370 490 IPR007685 GO:0015969
Rops8g03698 886 ProSiteProfiles TGS domain profile. 563 626 IPR004095 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03698 Rops-Chr8 77318329 77326394 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03698 183 498 EF-hand Containing Proteins AT3G17470 29.483 3.49e-37 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03698 K00951 - gmx:100786637 1540.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03698 8 77318329 77326394 Rops8g03698 8 77318329 77326394 ECH