LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops8g03658	ATGGGACAGTTGACTGGTTTGGCAGAGAGAATTGTGATTCTGTTAAAGAGTTTTTGTCATTGTAAGATTCAGGTTCAGCAGATTCAAACTCAACTCATAGTTCAGAACCTTCATTCACACACCACCATAGCTTACCACTTCATAGCTTCATGCCAATCTCATGGCCTTCTCAACTCTTCTTTGCTTCTCTATACAATGGTTGTTAAAAGACCCCATATTTTCATTTTCAACTCTCTCATTAGAGCCTTCTCACATTCCCACATCCCACACACCCCTTTTGCCATATACTCCCACATGCACCATAACTCCATTCTCCCTAACAACTTCACCTTCCCTTTTCTCTTCAAGTCTCTATCTGACTCCCATCACTTCTTTCAAGCTCAAAGTGTCCACACCCACGTGCTAAAACTTGGTCATCTTAATGATATTTACGTCCAGAATTCTCTTCTTGATGTCTATGCTTCATGTGGCTACGTGGCCTTGTGTCGACGGCTGTTTGATGAAATGCTTCACAGGGATGTTGTGTCGTGGACTGTCTTGATCATGTGTTACCGCAATGCTGGGAACTATGATGATGCTTTGCTTGTGTTTGAGCACATGCAATATGCGGGTGTGGTGCCTAATAGGGTGACAATGGTGAATGCCTTGGCTGCTTGTGCAAATTTCGGTGCTATTGAAATGGGGATTTGGATACATGATTTCATAAGGAGGAATGGGTGGGAATTGGATGTGATATTGGGGACGGCGTTGATTGAGATGTATGCAAAGTGTGGGAGAATGGAAGAGGGGGTGAGAGTTTTTTACAGCATGAAGGAAAAGAATGTATTTACTTGGAATGCAGTTATTAAAGGGCTAGCTTTAGCTAAGAATGGGGAAGAGGCAATTTGGTGGTTTAACAGAATGGAAGAGGATGGATTTAGAGCAGATGAAGTGACTTTGGTTGCAGTTCTTTCGGCATGCAGTCACTCGGGTTTTGTGGACATGGGTAGGAGGATTTTTAGTTCCTTGATTGATGGCAAGTATGGTTTTTATCCTAATGTCAAACACTATGCTTGTATGGTTGACCTCTTAGCACGTTCTGGGCGTTTGCAAGAGGCTTTTGAGATCATGAGAAGTATGCCTTTTGAACCAACGAAAGCCATGTGGGGATCCTTGTTGGTTAGTTCCAAATCTCAGGGTGACTTCCAATTCAGCGAGTTTGCAGCTAGAAAATTAATTGAGTTGGAGCCAGATAACACTGCCTATTATGTTCATCTGTCAAATCTGTATGCAGAGGTGGGAAGATGGAGTGATGTTGAGAAAGTAAGGGAAACAATGAAAGATAGACAACTGACCAAGGACTTGGGGTGTAGTTCTGTGGAGGTTGAACACCAAGGGCAGGTCAGCAAGCATTTGGCATAG	1401	0.4304	MGQLTGLAERIVILLKSFCHCKIQVQQIQTQLIVQNLHSHTTIAYHFIASCQSHGLLNSSLLLYTMVVKRPHIFIFNSLIRAFSHSHIPHTPFAIYSHMHHNSILPNNFTFPFLFKSLSDSHHFFQAQSVHTHVLKLGHLNDIYVQNSLLDVYASCGYVALCRRLFDEMLHRDVVSWTVLIMCYRNAGNYDDALLVFEHMQYAGVVPNRVTMVNALAACANFGAIEMGIWIHDFIRRNGWELDVILGTALIEMYAKCGRMEEGVRVFYSMKEKNVFTWNAVIKGLALAKNGEEAIWWFNRMEEDGFRADEVTLVAVLSACSHSGFVDMGRRIFSSLIDGKYGFYPNVKHYACMVDLLARSGRLQEAFEIMRSMPFEPTKAMWGSLLVSSKSQGDFQFSEFAARKLIELEPDNTAYYVHLSNLYAEVGRWSDVEKVRETMKDRQLTKDLGCSSVEVEHQGQVSKHLA*	467

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops8g03658	466	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	274	308	IPR002885	-
	Rops8g03658	466	Gene3D	Tetratricopeptide repeat domain	225	340	IPR011990	GO:0005515
	Rops8g03658	466	Gene3D	Tetratricopeptide repeat domain	341	464	IPR011990	GO:0005515
	Rops8g03658	466	PANTHER	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN	172	458	IPR046960	GO:0003723\|GO:0009451
	Rops8g03658	466	Pfam	E motif	396	454	IPR046848	-
	Rops8g03658	466	FunFam	Pentatricopeptide (PPR) repeat protein-like	252	457	-	-
	Rops8g03658	466	NCBIfam	pentatricopeptide repeat	276	309	IPR002885	-
	Rops8g03658	466	NCBIfam	pentatricopeptide repeat	175	208	IPR002885	-
	Rops8g03658	466	NCBIfam	pentatricopeptide repeat	248	274	IPR002885	-
	Rops8g03658	466	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	173	207	IPR002885	-
	Rops8g03658	466	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	243	273	IPR002885	-
	Rops8g03658	466	Pfam	Pentatricopeptide repeat domain	172	212	IPR002885	-
	Rops8g03658	466	Pfam	PPR repeat family	273	321	IPR002885	-
	Rops8g03658	466	FunFam	Pentatricopeptide repeat-containing protein At1g50270	108	227	-	-
	Rops8g03658	466	SUPERFAMILY	TPR-like	177	435	IPR011990	GO:0005515
	Rops8g03658	466	Gene3D	Tetratricopeptide repeat domain	114	224	IPR011990	GO:0005515
	Rops8g03658	466	Pfam	PPR repeat	350	373	IPR002885	-
	Rops8g03658	466	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	346	380	IPR002885	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops8g03658	Rops-Chr8	76873597	76874997	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops8g03658	104	455	Glycoside Hydrolase	AT3G49170	33.239	1.64e-63	218

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops8g03658	-		-	lja:Lj0g3v0239469.1	724.161