Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03643 ATGACTAGCTTAACTGCGAGCTTCACCGCTCGAATATGCAGCACGTGGCGCGACCTAGTCCCTATACGACACCGTCCCCTTCGTCATTTCATTAACAGAAACGTCACCTTTGCACCCAGCACCACACTCACACGCACAAGAATCGTCTGCATGGCGGAACCTCATCTGATAACGAAACTGGAATCGGCTGAGAAGACATGGAAAGAATTATCGGTGAAGCTTGCTGATCCAGATATTGTGTCCAATCATAGTGAGTACCAGAAGTTGGCACAATCAGTGGCAGAGCTTGATGAGGTTGTGGCCACGTACCAGAAATTTAAAGACTGTGAGAAGGTTCTGGAAGAAACCAAAGCTTTAGCAAAGGATGATGGCAACGATGAGGATATGGCAGAAATGATATCCTCTGAAATCGATTCTTTGTCCAGACAACTCTCAGAATTTGAGGAAAAGCTTAAGGTTTTACTGCTTCCAAGTGATCCTCTGGATGCAAGAAACATAATGATAGAAGTACGAGCAGGTACTGGTGGTGACGAGGCTGGAATATGGGCTGGTGATCTTGTCCGAATGTATGAAAGATATAGTGAACGGAATTCTTGGAAGTATTCTGGCATCTCAAGCTCTGAAGCAGAAAAAGGGGGATACAAGACTTACGTGATGGAGATAAAAGGAAATCGTGTCTACAGTAAATTAAAATACGAATCTGGTGTCCACCGAGTTCAACGTGTTCCTCTAACAGAAACACAAGGCCGCGTGCATACTTCTACTGCAACAGTGGCCATCATGCCAGAGGCTGATGAAGTTGAAGTCGTAATAGACCCGAAAGATATTGAACTGCAAACAGCACGTTCAGGGGGTGCTGGAGGCCAGAATGTTAACAAGGTTGAAACAGCAATTGATCTTTTCCATAAACCTACGGGAATCCGCATCTTTTGTACTGAAGAAAGGACTCAGATTCAGAATAAGAATCGTGCTTTTCAGTTACTCCGAGCCAAACTATATGAGATGAAGGTGAGAGAGCAGCAAGAGGCCATACGAAATCAAAGGAAATCACAGGTTGGCACAGGAGCACGTGCAGAAAAAATTCGGACATACAATTATAAGGACAACAGGGTTACTGACCACAGATTGAAGATGAACTTTGAGCTCACCTCTTTTCTTGATGGTGACATAGAAGATGCTGTTCAGTCTTGTGCTGCGATGGAGCAAAAGGAGCTTCTCGAAGAACTTGCTGAGTCTGTAGGTGCTCCAGTGGGCTGA 1257 0.4487 MTSLTASFTARICSTWRDLVPIRHRPLRHFINRNVTFAPSTTLTRTRIVCMAEPHLITKLESAEKTWKELSVKLADPDIVSNHSEYQKLAQSVAELDEVVATYQKFKDCEKVLEETKALAKDDGNDEDMAEMISSEIDSLSRQLSEFEEKLKVLLLPSDPLDARNIMIEVRAGTGGDEAGIWAGDLVRMYERYSERNSWKYSGISSSEAEKGGYKTYVMEIKGNRVYSKLKYESGVHRVQRVPLTETQGRVHTSTATVAIMPEADEVEVVIDPKDIELQTARSGGAGGQNVNKVETAIDLFHKPTGIRIFCTEERTQIQNKNRAFQLLRAKLYEMKVREQQEAIRNQRKSQVGTGARAEKIRTYNYKDNRVTDHRLKMNFELTSFLDGDIEDAVQSCAAMEQKELLEELAESVGAPVG* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03643 418 Gene3D - 49 160 - -
Rops8g03643 418 FunFam Peptide chain release factor 1 162 272 - -
Rops8g03643 418 SMART PCRF_a_2 118 233 IPR005139 GO:0006415
Rops8g03643 418 Hamap Peptide chain release factor 1 [prfA]. 56 410 IPR004373 GO:0006415|GO:0016149
Rops8g03643 418 Gene3D - 272 331 - -
Rops8g03643 418 PANTHER LD18447P 51 412 - -
Rops8g03643 418 FunFam Peptide chain release factor 1 334 413 - -
Rops8g03643 418 SUPERFAMILY Release factor 65 406 IPR045853 -
Rops8g03643 418 NCBIfam peptide chain release factor 1 52 411 IPR004373 GO:0006415|GO:0016149
Rops8g03643 418 Gene3D - 162 271 - -
Rops8g03643 418 Pfam RF-1 domain 265 375 IPR000352 GO:0003747|GO:0006415
Rops8g03643 418 Gene3D - 332 416 - -
Rops8g03643 418 FunFam Peptide chain release factor 1 264 359 - -
Rops8g03643 418 Coils Coil 130 150 - -
Rops8g03643 418 Pfam PCRF domain 64 258 IPR005139 GO:0006415
Rops8g03643 418 ProSitePatterns Prokaryotic-type class I peptide chain release factors signature. 282 298 IPR000352 GO:0003747|GO:0006415
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03643 Rops-Chr8 76628008 76633721 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03643 K02835 - gmx:100777225 717.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03643 8 76628008 76633721 Rops8g03643 8 76628008 76633721 ECH