Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03600 ATGCGAAGACCAAGAAACATGAGACCAAATATCGTTTCTGAGGCGGGGGTGTCTACTAGGGTGAATCAATGGTGGGAAAGCATTCCATTCCTCACTTCTGCAGTGGTGGTTGTCTGTGGAATCATTTACTTGGTTTGTCTTTTGGTTGGATATGATTCCTTCGCAGAGATATGCTTCTTGCCCTCTGCTGTTGTTTCACGGTTTCAAGTTTACAGGATTTATACCTCCATTATTTTCCATGGTTCACTACTTCATGTTCTCTTCAACATGATGGCTTTAGTTCCCTTGGGCTCTGAGCTGGAGAGGATCATGGGCTCAGTTCGCTTGCTATATGTCATTATTTTGTTGGCAACAAGCAATGCTATATTCCATGTTCTCATAGCACTGCTGGTGGCACACAATCCTCTTCTTACATATGATTACCTCATGAATGAGTGTGCAATAGGCTTCTCAGGAGTTCTATTTTCAATGATTGTTATAGAGACAAGCCTGAGTGGAGTTCAATCCAGGAGTGTGTTTGGGTTGTTTAATGTGCCTGCCAAGTGGTATGCATTCTTTTTGTTGGTAGTATTCCAGCTTCTCATGCAAAATGTCTCACTACTTGGACACCTTTGTGGCATTTTATCCGGGTTTGCATATACATATGGCTTGTTTAATTTCCTCATACCTGGGACATCTTTTTATTCTTCCATTGAATCCTCCTCCTGGCTTTCATCGTGTGTGAGACGTCCTAAATTTATTGTTTGCACTGGCGGAAATCCTTCGGGTTATATCCCTACACATACGAGCCAAAATTCAACAACCAGTGGAATACTTTCTGGAAATATTTGGAGGAACCTAACATCAATGATGCCTCAAAGGGAAGTGTCTGCTCAGTCAACTGAGGACAGTAGGTTCCCTGGGAGGGGACGGAGCCTTGGTTCTGATCAACGTCAAAGGGCTTCTGATCTTCATTCAGATTCAAATCTTCAAGCTAGACTCTTGGAGGAAAGCAGCCCTAATCATCCTTCGGATGCAACTACTCTTAATACTGCTCAACAGTTATCAGAAGGAAGGCAATCAGTTGATAATGTAGCTGTTGCAGCAGCAGGTGTTCCACGGCATCAGGGTGCAGTTGCTTCAGAAGAAGATATTAAAAAACTTGTATCAATGGGCTTTGATAGGACGCAGGTGGAAGTGGCACTGGCAGCTGCTGATGGTGATCTTAATGTGGCAGTGGAAATACTCATGAGCCAGCAGGGTTAA 1245 0.4345 MRRPRNMRPNIVSEAGVSTRVNQWWESIPFLTSAVVVVCGIIYLVCLLVGYDSFAEICFLPSAVVSRFQVYRIYTSIIFHGSLLHVLFNMMALVPLGSELERIMGSVRLLYVIILLATSNAIFHVLIALLVAHNPLLTYDYLMNECAIGFSGVLFSMIVIETSLSGVQSRSVFGLFNVPAKWYAFFLLVVFQLLMQNVSLLGHLCGILSGFAYTYGLFNFLIPGTSFYSSIESSSWLSSCVRRPKFIVCTGGNPSGYIPTHTSQNSTTSGILSGNIWRNLTSMMPQREVSAQSTEDSRFPGRGRSLGSDQRQRASDLHSDSNLQARLLEESSPNHPSDATTLNTAQQLSEGRQSVDNVAVAAAGVPRHQGAVASEEDIKKLVSMGFDRTQVEVALAAADGDLNVAVEILMSQQG* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03600 414 CDD UBA_At3g58460_like 375 410 - -
Rops8g03600 414 PANTHER DER1-LIKE PROTEIN, DERLIN 21 307 - -
Rops8g03600 414 Pfam UBA/TS-N domain 375 409 IPR015940 -
Rops8g03600 414 MobiDBLite consensus disorder prediction 330 353 - -
Rops8g03600 414 Pfam Rhomboid family 66 219 IPR022764 GO:0004252|GO:0016020
Rops8g03600 414 SUPERFAMILY UBA-like 367 413 IPR009060 GO:0005515
Rops8g03600 414 Gene3D - 344 414 - -
Rops8g03600 414 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 372 412 IPR015940 -
Rops8g03600 414 FunFam Rhomboid-like protein 15 22 219 - -
Rops8g03600 414 Gene3D - 22 219 IPR035952 -
Rops8g03600 414 MobiDBLite consensus disorder prediction 287 318 - -
Rops8g03600 414 SMART uba_6 374 411 IPR015940 -
Rops8g03600 414 SUPERFAMILY Rhomboid-like 26 220 IPR035952 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03600 Rops-Chr8 76083008 76089669 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03600 - - gmx:100798661 728.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03600 8 76083008 76089669 Rops8g03600 8 76083008 76089669 ECH