Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03587 ATGAAATTCGGTTACGCATTCAGAGAGTACCTGCAGGGAGAGAGGGAGCGGTTATTGGATGAGAATTGTGCCTATATTGAATATATGAGGTTAAAAAAAGTGTTAAAGCGTTGCCGCAATTGTAGAGAAGACAACTCTCACCACAAAGATCAGTTATGTCAATTGTGCGATCAGAAGTTCTTCTCGGAGTTGATGAAGGAAGCATCAGATATATCAGGATACTTTAGTTCAAGAGTTCAGCATCTCCTTCAACTTCATATTGCAACAGGACTGCAGAGATATGTATTGCGTTTGCGCCAGTGCTTTAAAAATGATAGGCAAGCCCTTGTCCAAGAAGGGAAAATTCTAATTGAGTACATTGCAATGAATGCCATTGCAATGAGGAAGATACTTAAGAAATATGATAAAGTGCACAGCTCCATGAATGGGGAGAATTTCAAATCTAGGATGCACGCGGAACACATTGAACTTTTACACTCACCTTGGCTAATTGAATTGGGTGCTTTTTATCTGAATTCTAGTGGGCAAGATGGTTGTGAGCTTGATGGAGTCCATGGTCACTTTTCATGTGATCTAAATGTAACTAAAGCTGCAATGACACTGATTCTTCCGGATTCTATGAAGCTCGAGTATGATCTAACTTGTGCAATTTGCCTGGATTTTGTTTTCAATCCATATGCTTTGGGCTGTGGTCATATCTTCTGCAAGTCATGTGCTTGCTCAGCTGCCTCTGTGATGATTTTCCAAGGCCTTAAGGCTGCAAGTCTGGAGTCAAAGTGTCCTATATGCAGAGAGGTTGGAGTTTATTCAAAGGCAGTGCATATGTTAGAACTTGATTTGCTCATGAAAAGAAGGTGCAAAGAACACTGGAAAGAGAGGCTAGCTGCTGAACGAGTTGATATGTTGAAGCAATCCAAGGAATACTGGAACTTTCAGTCCACATATGCAATTGGATTACTGTAG 963 0.4071 MKFGYAFREYLQGERERLLDENCAYIEYMRLKKVLKRCRNCREDNSHHKDQLCQLCDQKFFSELMKEASDISGYFSSRVQHLLQLHIATGLQRYVLRLRQCFKNDRQALVQEGKILIEYIAMNAIAMRKILKKYDKVHSSMNGENFKSRMHAEHIELLHSPWLIELGAFYLNSSGQDGCELDGVHGHFSCDLNVTKAAMTLILPDSMKLEYDLTCAICLDFVFNPYALGCGHIFCKSCACSAASVMIFQGLKAASLESKCPICREVGVYSKAVHMLELDLLMKRRCKEHWKERLAAERVDMLKQSKEYWNFQSTYAIGLL* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03587 320 CDD RING-HC_BAH1-like 205 278 - -
Rops8g03587 320 ProSiteProfiles Zinc finger RING-type profile. 215 264 IPR001841 -
Rops8g03587 320 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 318 IPR033326 -
Rops8g03587 320 CDD SPX_BAH1-like 2 143 - -
Rops8g03587 320 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 193 314 IPR013083 -
Rops8g03587 320 ProSitePatterns Zinc finger RING-type signature. 230 239 IPR017907 -
Rops8g03587 320 Pfam RING-type zinc-finger 215 239 IPR027370 -
Rops8g03587 320 SMART ring_2 215 263 IPR001841 -
Rops8g03587 320 ProSiteProfiles SPX domain profile. 1 148 IPR004331 -
Rops8g03587 320 SUPERFAMILY RING/U-box 207 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03587 Rops-Chr8 76008944 76012258 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03587 K16275 - gmx:100781704 541.962
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03587 8 76008944 76012258 Rops8g03587 8 76008944 76012258 ECH