Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03577 ATGGATTCCTCTTCCATCTATGGTGTCTCCGCTACCATCTTCCTCCTCCTTCTTTCCCTCGCACCACTCCATTCCGCATTCCCTCATAATTCCTCTTCTTCTTCTTCATCCGGTCAGATCAATTCCAATTCCATCCTCGTCGCCCTTCTGGATTCCCATTACACCGAACTTGCAGAGCTTGTCGAGAAAGCCATTCTCCTTCAGAAACTTGAAGATGCCGTCGGCAACCACAACATCACCATCTTCGCCCCGAGAAACCAAGCTCTGGAACGCGACCTCGACCCTGAATTCAAGCGCTTCTTGCTTGAACCTCGCAATCTCAGGTCACTCCAGACTCTCTTGATGTCTCACATTCTCCCCAACCGAATCTCTTCCCACAAATGGCCATCCTCCCTCCTCCGCCACCACACTCTCTCCTCCGACCACCACCTCCATTTAACTACCGATCCCTCCGGCAAGAAAACTGTCGACTCCGCCGAGATCCTCCGTCCTGACGACGTCGTCCGTCCCGACGGTGTCATCCACGGGATCGAACGCCTCATCGTCCCCCGCTCCGTCCAGGAAGATTTCAACCGGAGAAGAAACCTCCGCGCGATCTCCGCCGTTCTCCCTGAAGGAGCGCCGGAGGTGGATCCCAGAACCCACCGCTTGAAGAAACCAGCACCGGTTCCAGCCGGAGCTCCTCCAGTCCTCCCAATCTACGACGCGATGGCACCAGGTCCTTCCCTAGCTCCGGCGCCGGCTCCTGGACCCGGAGGTCCACGTCATCACTTCAACGGCGAGCGACAGGTGAAGGACTTCATCCACACACTTCTGCATTATGGCGGTTATAACGAAATGGCGGATATTCTGGTAAACCTAACGTCCTTGGCAACCGAGATGGGACGGTTAGTTTCCGAGGGTTACGTTATAACCGTTTTGGCTCCAAACGATGAAGCCATGGCTAAATTAACCACTGACCAATTGAGCGAACCAGGTGCACCCGAACAGATTATATACTACCACATCATTCCCGAGTACCAGACTGAAGAGAGTATGTACAATGCGGTAAGAAGGTTCGGTAAGGTCCATTACGATACCCTGCGGTTACCCCATAAGGTTGTTGCTCAGGAATCTGACGGTTCCGTTAAATTCGGTCACGGCGATTCCTCTGCCTATCTTTTCGACCCTGATATCTACACCGATGGGAGGATTTCCGTCCAGGGAATTGACGGCGTTCTTTTCCCTCCTGAGGACAATGACGAACACCATTCCACCACTCACCGTACAACTCCACTTGTTAAAGTTGCTGCTAAACCCAGAAGAGGTAAGTTGCTGGAACTCGCCTGTGGCATGCTTGGAGCTTTTGGACGAGTCTGCTAA 1362 0.5323 MDSSSIYGVSATIFLLLLSLAPLHSAFPHNSSSSSSSGQINSNSILVALLDSHYTELAELVEKAILLQKLEDAVGNHNITIFAPRNQALERDLDPEFKRFLLEPRNLRSLQTLLMSHILPNRISSHKWPSSLLRHHTLSSDHHLHLTTDPSGKKTVDSAEILRPDDVVRPDGVIHGIERLIVPRSVQEDFNRRRNLRAISAVLPEGAPEVDPRTHRLKKPAPVPAGAPPVLPIYDAMAPGPSLAPAPAPGPGGPRHHFNGERQVKDFIHTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVITVLAPNDEAMAKLTTDQLSEPGAPEQIIYYHIIPEYQTEESMYNAVRRFGKVHYDTLRLPHKVVAQESDGSVKFGHGDSSAYLFDPDIYTDGRISVQGIDGVLFPPEDNDEHHSTTHRTTPLVKVAAKPRRGKLLELACGMLGAFGRVC* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03577 453 Gene3D FAS1 domain 283 410 IPR036378 -
Rops8g03577 453 Gene3D FAS1 domain 45 183 IPR036378 -
Rops8g03577 453 FunFam Fasciclin-like arabinogalactan protein 16 259 410 - -
Rops8g03577 453 SMART fasc_3 305 410 IPR000782 -
Rops8g03577 453 SMART fasc_3 80 184 IPR000782 -
Rops8g03577 453 SUPERFAMILY FAS1 domain 43 184 IPR036378 -
Rops8g03577 453 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 3 453 IPR044654 -
Rops8g03577 453 SUPERFAMILY FAS1 domain 243 411 IPR036378 -
Rops8g03577 453 ProSiteProfiles FAS1/BIgH3 domain profile. 41 181 IPR000782 -
Rops8g03577 453 ProSiteProfiles FAS1/BIgH3 domain profile. 264 407 IPR000782 -
Rops8g03577 453 Pfam Fasciclin domain 53 183 IPR000782 -
Rops8g03577 453 Pfam Fasciclin domain 299 409 IPR000782 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03577 Rops-Chr8 75827351 75829913 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03577 - - gmx:100818575 729.554
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03577 8 75827351 75829913 Rops8g03577 8 75827351 75829913 ECH