Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03570 ATGGACAACCTCTTCGCCACCGATAACTCCGATTACTTCTCCGACGACTTCGATTCCACATCCTCCCTCCGCCCCCACCGTCGCTTCTTCCAAGAGGATGAACACGATTTCGGTGATGACAGGGTCTATTTACTTCCCTACAGGTGGTGGATTGAGGCAGAAGGTGAAAGTGATCGTGTAGAAGGTGTTCTGTATACCGTGTTGTGCAATTCTGATTCTGACTCTGAGATTTTGCTTCATTTGAGGAAGGAAGAGTATCGCGAGGAGATTAAGAATCTGGAGGTGGGGTTTTCAGGTCGTCAATATGCCTTGGTTCCTGAAGGAATCTGGTTGCGTACTTTGAAACGGTATAATGATTTTAATAATGCAGTGAAAGATTTCGGGAGCCTTGTCTATGCAGAGGACTGTTTGCTGGATTTGTTCCCCTTGCAAGTTAGGATATTTGTTGCATGGGAAACCAATTCACTGGTGGCAAAGATAAGCCAAAAGGAAAATTTGGTTGACTTCTACAAGAAAGCGTGTGACATTTTCAATTCTGCCTATAACCCAGTGCATATATGGGACTTTTCAGGGCAGACAACCCAGTTCTTCATGAATGACAAATTTAGGTTGCCAAATGATTCTTCTGGTCAACCTGGAAAAGAGGTTCTTCTGGAGTTACAAGTTCATGGACTTTCAGTTTCAGTGAGGGGTAATGGGAGCAATGAGATGATTTCAGATAGATCTCAGATGGAAAGTTCTTCTCACATTAGCTTTGTTATGATGAATGGAAGCACTGGCAATGTGATCCCCAATGTAATAACAACCAATTATTTGCAAGGAAGTAGCTATCGAGCAGTTCGATCTTTGGGCTTGACAGGATTACAGAATCTTGGAAATACCTGTTTTATGAATAGTGCCATTCAGTGTCTGGCTCACACACCAAAGCTTGTTGATTTTTTCCTTGGAGATTACCGTAAAGAGATAAATTATGAAAATCCCTTGGGAATGAATGGAGAACTTGCTTTAGCTTTTGGAGATTTACTAAGGAATCTATGGGTTCCTGGAGCAAGGCCTGTGGCACCAAGAATGTTTAAGATGAAACTGGCTAATTTTGCTCCTCAGTTTAGTGGTTATAGCCAACATGACTCTCAAGAACTTCTTGCTTTTTTGTTGGATGGACTGCATGAAGACCTTAATCGTGTAAAACGCAAGCCATATCATGAAGTTAAGGATGCAGATGGCCGTCCAGATGAAGAAGTGGCAGAAGAGTATTGGAGAAATCACCTTGCTCGCAATGACTCCATAGTAGTAGATCTGTGCCAAGGTCAGTTCCGGTCGACGTTGGTTTGCCCTATTTGCAAGAAGGTTTCCATCACGTTCGACCCTTTTATGTATCTATCTCTGCCTTTACCTTCCACAACAATACGGACCATGACTTTGACTGTCATGAGCACCGATGAGATTATGCCACCTTCTACAATTACCGTAACAGTGCCTGAATCTGGAACACTTAAGGATCTTATTGGGGCTTTAAGTGCTTCTTGTTCGCTTAGAGATGATGAAACCCTCTTGGTGGCTGAGATATACAAGAATAAGATTTTTCGAGTATATGAGGATCCATCCGATTCATTAGCTGATATTAGAGATCAAGACAAACTTGTTGCTTACCGAATGCAGAAGAATAATAAAGCTAGTCCCTTGGTTTTTTTCGTGCATGAACATTTGGTGGAAATTTCTGGGAAGGAGAGGTTTGAAAATAGATTGTTTGGTATTCCACTTGTAGCAAGGTTGTCCAGTATTTCTCGTGGATATGATATACGTAGGAAGTTTCTGAAGTTAATCAATCCGTTTCTGTTGCGAAACATTGAAGATGTAATAGATGAGTATGATAAGGATGATGATGTTATTAAAAAACTAAATGAAGATGATGATTCAGACGATCCTACTAGCTCAGCTGCAATAGGAAGTGAGGCAGCCTCAAACAGCAGAACAGAGGATGACATGTGTTCATGGCCTGACTTTGAATTTTACTTACCTGCTGGGCTAGGAAAGGAAAATGTTAAGATAACATTGAACGAACCATTACAGGGCACATTGTCCAGAAAACTGGAGGTGGTTGTCTTATGGTCAGATAAGATGCTTAAAATGTATGATACAAATCTGCTCGATTCATTGCCTGAAGTTTTCAAGTCCCAGCTATTCACCAAGAGAATGCAAGAATCAGTTTCTATTTACAAGTGCCTTGAAGCCTTCTTGAAGGAGGAACCTCTTGGGCCAGAAGACATGTGGTACTGTCCTACCTGCAAAAAACCTCAGCAAGCAACTAAAAAATTAGATCTTTGGAGATTGCCAGAAATCCTTGTTGTTCATTTAAAGAGGTTCTCGTACAGCCGATTCTTCAAGAACAAGCTGGAAACATTCGTTGACTTCCCAATTAATGATCTGGACTTCTCAACCTATGTTGCTCACAGGAGCAGTCAGTCTTCCAACCGCTATGTGTTGTATGCAATTAGTTGTCACTATGGAGGGTTAGGAGGAGGTCACTATACAGCATTTGTCCGTTATGGCCATGATAAATGGTATGAGTTTGATGACAGCAGGGTTTCCCCTGCTAATGAGGACATGATAAAGACTTCTGCTGCTTATGTTCTTTTCTACAGGAAAGTTTAG 2652 0.4148 MDNLFATDNSDYFSDDFDSTSSLRPHRRFFQEDEHDFGDDRVYLLPYRWWIEAEGESDRVEGVLYTVLCNSDSDSEILLHLRKEEYREEIKNLEVGFSGRQYALVPEGIWLRTLKRYNDFNNAVKDFGSLVYAEDCLLDLFPLQVRIFVAWETNSLVAKISQKENLVDFYKKACDIFNSAYNPVHIWDFSGQTTQFFMNDKFRLPNDSSGQPGKEVLLELQVHGLSVSVRGNGSNEMISDRSQMESSSHISFVMMNGSTGNVIPNVITTNYLQGSSYRAVRSLGLTGLQNLGNTCFMNSAIQCLAHTPKLVDFFLGDYRKEINYENPLGMNGELALAFGDLLRNLWVPGARPVAPRMFKMKLANFAPQFSGYSQHDSQELLAFLLDGLHEDLNRVKRKPYHEVKDADGRPDEEVAEEYWRNHLARNDSIVVDLCQGQFRSTLVCPICKKVSITFDPFMYLSLPLPSTTIRTMTLTVMSTDEIMPPSTITVTVPESGTLKDLIGALSASCSLRDDETLLVAEIYKNKIFRVYEDPSDSLADIRDQDKLVAYRMQKNNKASPLVFFVHEHLVEISGKERFENRLFGIPLVARLSSISRGYDIRRKFLKLINPFLLRNIEDVIDEYDKDDDVIKKLNEDDDSDDPTSSAAIGSEAASNSRTEDDMCSWPDFEFYLPAGLGKENVKITLNEPLQGTLSRKLEVVVLWSDKMLKMYDTNLLDSLPEVFKSQLFTKRMQESVSIYKCLEAFLKEEPLGPEDMWYCPTCKKPQQATKKLDLWRLPEILVVHLKRFSYSRFFKNKLETFVDFPINDLDFSTYVAHRSSQSSNRYVLYAISCHYGGLGGGHYTAFVRYGHDKWYEFDDSRVSPANEDMIKTSAAYVLFYRKV* 884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03570 883 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 826 843 IPR018200 GO:0004843|GO:0006511
Rops8g03570 883 Gene3D Cysteine proteinases 273 516 - -
Rops8g03570 883 Gene3D Cysteine proteinases 611 883 - -
Rops8g03570 883 MobiDBLite consensus disorder prediction 643 660 - -
Rops8g03570 883 Pfam Ubiquitin carboxyl-terminal hydrolase 286 880 IPR001394 GO:0004843|GO:0016579
Rops8g03570 883 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 287 302 IPR018200 GO:0004843|GO:0006511
Rops8g03570 883 CDD Peptidase_C19R 710 881 - -
Rops8g03570 883 MobiDBLite consensus disorder prediction 632 660 - -
Rops8g03570 883 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 286 883 IPR028889 -
Rops8g03570 883 SUPERFAMILY Cysteine proteinases 284 882 IPR038765 -
Rops8g03570 883 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 242 882 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03570 Rops-Chr8 75766584 75774339 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03570 734 883 Miscellaneous Gene Families AT2G24640 32.026 5.53e-16 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03570 - K21343 gmx:100791802 1372.84