Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03531 ATGGCTTCAATTGCCAAAAGGCTTGAAGGTAAAGTGGCAATAATCACAGGAGGTGCTAGTGGTATTGGTGCTGCTACTGCTAAACTATTTGTTCAACATGGTGCTAAAGTAATTATTGCAGATGTCCAACATGACTTAGGCCAATCCCTTTGCAAAAGTCTTGGCACAAATTTCAACATTCTCTACGTTCACTGTGATGTAACTTGTGATTCAGATGTGAAAAACGTGGTTGATATGGCAGTATCCAAGTTCGGTAAGCTTGACATCATGTACAACAACGCTGGCATCTCTGGTGACTTGAATAGATCAATATTGGCTTCTGGTAACGAAGATTTCAAAAGGGTTTTCGAAGTTAATGTTTATGGAGCTTTCTTGGGTGCCAAGCATGCTGCTAGGTTCATGATCCCAGCAAAGAAAGGGGTCATTCTTTTTACTTCAAGTGTTGCTTCGATACTTGGTGGTGAAGCAACACATGCTTACACAATGTCAAAACATGCAGTGGTGGGGCTTATGAAGAATTTGTGCGTAGAATTGGGGCAGTATGGGATTAGAGTCAATTGCATCTCTCCTGGAGCCATTCCAACTCCATTGCTGAACAGCGCTTTGAAGATGAACAAGAAAGAAACACAGAAAGTGCTTTGCTCAGTTGCAGTGTTAAAAGAAGCAGTTCTTGAGGCTGAGGACATAGCCCAGGCAGCACTTTATTTGAGCAGTGATGAGTCCAAGTTCGTTAGTGGAGTCAACCTTGTATTGGATGGGGGTTATAGCACTACCAATATGTCATTCACTTCGGCACTCAATGGTCTGATGAATCACACCACCAACCACATTCAGTAA 837 0.4241 MASIAKRLEGKVAIITGGASGIGAATAKLFVQHGAKVIIADVQHDLGQSLCKSLGTNFNILYVHCDVTCDSDVKNVVDMAVSKFGKLDIMYNNAGISGDLNRSILASGNEDFKRVFEVNVYGAFLGAKHAARFMIPAKKGVILFTSSVASILGGEATHAYTMSKHAVVGLMKNLCVELGQYGIRVNCISPGAIPTPLLNSALKMNKKETQKVLCSVAVLKEAVLEAEDIAQAALYLSSDESKFVSGVNLVLDGGYSTTNMSFTSALNGLMNHTTNHIQ* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03531 278 PRINTS Glucose/ribitol dehydrogenase family signature 12 29 IPR002347 -
Rops8g03531 278 PRINTS Glucose/ribitol dehydrogenase family signature 85 96 IPR002347 -
Rops8g03531 278 PRINTS Glucose/ribitol dehydrogenase family signature 160 179 IPR002347 -
Rops8g03531 278 PRINTS Glucose/ribitol dehydrogenase family signature 219 239 IPR002347 -
Rops8g03531 278 PRINTS Glucose/ribitol dehydrogenase family signature 181 198 IPR002347 -
Rops8g03531 278 PRINTS Glucose/ribitol dehydrogenase family signature 134 150 IPR002347 -
Rops8g03531 278 FunFam Short-chain dehydrogenase reductase 1 262 - -
Rops8g03531 278 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 9 257 IPR036291 -
Rops8g03531 278 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 147 175 IPR020904 GO:0016491
Rops8g03531 278 Gene3D - 2 270 - -
Rops8g03531 278 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 5 259 - -
Rops8g03531 278 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 85 96 IPR002347 -
Rops8g03531 278 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 160 179 IPR002347 -
Rops8g03531 278 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 140 148 IPR002347 -
Rops8g03531 278 Pfam Enoyl-(Acyl carrier protein) reductase 17 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03531 Rops-Chr8 75004013 75004930 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03531 8 267 Acyl Lipid Metabolism Gene Families AT1G63380 28.731 1.17e-27 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03531 - - aprc:113863381 460.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03531 8 75004013 75004930 Rops8g03531 8 75004013 75004930 ECH