Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03514 ATGGAAAATAACGATGTTGATGTGAATGAAAGGGAATTAGCGAGAGATAATAATGGTTTTGTACAAGTGTCTGAGCCTTCGGTTAGTACAAGTAGCTCTGCTGAAGATAGTATTTCTTATGCCAACGTATTGCGTTCTAGGAACAAGTTTGTTGATGCTCTTGCTCTGTACGAGCGTGTTCTGAAGAATGATGCTGCAAATGTGGAGGCTCTCACTGGGAAAGGGATGTGCCTTCAGATGCAGAATATGAGAAAGCTCGCTCTTGACGCTTTTTCTGAGGCTATCAAGCTTGATCCTCAAAATGCTTGTGCCCTCACACAGTGTGGTATTCTATACAAGGAAGAGGGTCGCCTTGTGGAGGCTGCTGAGTCATATCAGAAGGCTTTGCGAGTGGATCCTTCTTACAAAGCTGCTGCTGAATACCTTGCCATTGTTTTAACAGATATTGGAACCAACATAAAGCTTGCAGGAAACACTCAGGAGGGAATTCAAAAATATTTGGAAGCCCTCAGAGTAGATCCACACTATGCTCCAGCATATTATAATCTTGGTGTGGTCTATTCTGAAATGATGCAATATGACATGGCCCTCAGTTTCTATGAAAAGGCTGCATCAGAGAGGCCTATGTATGCTGAAGCATATTGCAATATGGGTGTGATTTTCAAAAATCGTGGTGATTTGGAAATGGCTATTACTTGTTATGAGAGGTGTTTAGCTGTTTCACCAAACTTTGAAATTGCAAAGAATAATATGGCTATAGCTTTGACTGATTTGGGAACAAAGGTTAAATTGGAGGGGGACATAAACCGAGGTTTGGCCTTTTATAAGAAAGCTTTATATTACAACTGGCGTTATGCTGATGCCATGTATAATCTTGGGGTTGCTTATGGTGAGATGCTTAAGTTTGATATGGCTATTGTATTCTATGAACTTGCCTTTCACTTCAATCCACATTGTGCGGAAGCTTGTAACAATCTTGGAGTTATATATAAAGATCATGACAACCTTGATAAAGCTGTAGAATGCTACCAGCTTGCTTTGTCAATCAAACCCAACTTTTCGCAGTCATTAAATAACCTTGGTGTTGTATACACTGTCCAGGGTAAAATAGATGCTGCTGCAAATATGATTGAGAAAGCTATCACTGCAAATCCAACATATGCAGAAGCATACAATAATCTAGGAGTTCTTTATAGGGATGTTGGTGATATTGCTCTAGCAATTAATGCTTATGAGCAATGTCTTAAGAGTGATCCTGATTCTCGAAATGCTGGCCAGAATCGATTGCTTGCAATGAATTACATGGATGAAGGAAATGATGACACACTTTTTGAGGCTCACAGGGATTGGGGTAGGCGATTTATGAGATTATATCCACAGTACACATCATGGGACAACCCAAAAGATCCTGAACGGCCTCTTGTGATAGGATATGTATCTCCTGATTATTTTACTCATTCCGTGTCATATTTCATAGAAGCTCCCCTTGTCTATCACGACTACACTAATTATAAAGTCATTGTTTATTCTGCCGTAGTCAAGGCAGATGCAAAAACCGTTAGATTTAGAGAGAAAGTCTTAAATAAGGGTGGTATCTGGAAAGATATTTATGGGATTGACGAAAAGAATGTTGCCGACATGGTTCGAGAAGATCAAGTTGATATTTTGGTAGAACTTACAGGTCATACTGCAAACAATAAGTTGGGAATGATGGCATGTCGACCTGCACCAATTCAGATAACTTGGATTGGTTATCCCAATACTACCGGATTGCCTACAATTGATTATCGAATCACTGATTCATTAGCAGACCCTCCTGAAACAAAGCAGAAGCATGTTGAGGAGTTAGTTAGATTGCCAGAAAGCTTCCTTTGTTACACCCCGTCCCCTGAGGCTGGTCCTGTTTGTCCAACTCCTGCTCTCTCCAATGGTTTTATCACGTTTGGTAGTTTCAACAATCTTGCCAAGATCACACCTAAAGTACTGCAGGTTTGGGCAAGGATACTGTGTGCAATTCCAACCTCTCGCCTTGTGGTAAAATGTAAACCATTTTGCTGTGACAGTGTGAGACAGAGATTCCTTTCAACACTAGAGCAGTCGGATTTGGAACCGCTACGTGTTGATCTTCTGCCCCTTATTAATTTGAACCATGATCATATGCAAGCCTATTCTCTGATGGACATCAGTTTGGACACATTCCCATATGCTGGAACAACTACAACATGTGAATCTCTTTATATGGGAGTTCCATGTGTCACTATGGCTGGTTCGGTACATGCGCACAATGTTGGTGTTAGTCTTCTTAGCAAAGTTGGACTGGAGCATTTGATTGCCAGAAATGAAGATGAATACGTTCAATTGGCTCTGCAGTTGGCCTCTGACATTTCTGCACTCCAAAATTTGAGAATGAGTCTGAGAGATCTCATGTCTAAGTCCCCTCTCTGTGATGGTGCTAATTTTACCCTAGGTCTAGAGTCAACATATAGAAATGTGTGGCGCAGGTATTGTAAAGGAGATGTCCCGTCTTTGAAACGCATGGAATTGTTGTAA 2550 0.4086 MENNDVDVNERELARDNNGFVQVSEPSVSTSSSAEDSISYANVLRSRNKFVDALALYERVLKNDAANVEALTGKGMCLQMQNMRKLALDAFSEAIKLDPQNACALTQCGILYKEEGRLVEAAESYQKALRVDPSYKAAAEYLAIVLTDIGTNIKLAGNTQEGIQKYLEALRVDPHYAPAYYNLGVVYSEMMQYDMALSFYEKAASERPMYAEAYCNMGVIFKNRGDLEMAITCYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINRGLAFYKKALYYNWRYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDHDNLDKAVECYQLALSIKPNFSQSLNNLGVVYTVQGKIDAAANMIEKAITANPTYAEAYNNLGVLYRDVGDIALAINAYEQCLKSDPDSRNAGQNRLLAMNYMDEGNDDTLFEAHRDWGRRFMRLYPQYTSWDNPKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYTNYKVIVYSAVVKADAKTVRFREKVLNKGGIWKDIYGIDEKNVADMVREDQVDILVELTGHTANNKLGMMACRPAPIQITWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELVRLPESFLCYTPSPEAGPVCPTPALSNGFITFGSFNNLAKITPKVLQVWARILCAIPTSRLVVKCKPFCCDSVRQRFLSTLEQSDLEPLRVDLLPLINLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLSKVGLEHLIARNEDEYVQLALQLASDISALQNLRMSLRDLMSKSPLCDGANFTLGLESTYRNVWRRYCKGDVPSLKRMELL* 850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03514 849 Gene3D - 477 628 - -
Rops8g03514 849 ProSiteProfiles TPR repeat profile. 320 353 IPR019734 GO:0005515
Rops8g03514 849 Pfam Tetratricopeptide repeat 109 134 IPR019734 GO:0005515
Rops8g03514 849 Pfam Tetratricopeptide repeat 41 102 - -
Rops8g03514 849 SMART tpr_5 102 135 IPR019734 GO:0005515
Rops8g03514 849 SMART tpr_5 68 101 IPR019734 GO:0005515
Rops8g03514 849 SMART tpr_5 252 285 IPR019734 GO:0005515
Rops8g03514 849 SMART tpr_5 34 67 IPR019734 GO:0005515
Rops8g03514 849 SMART tpr_5 388 421 IPR019734 GO:0005515
Rops8g03514 849 SMART tpr_5 211 244 IPR019734 GO:0005515
Rops8g03514 849 SMART tpr_5 143 176 IPR019734 GO:0005515
Rops8g03514 849 SMART tpr_5 320 353 IPR019734 GO:0005515
Rops8g03514 849 SMART tpr_5 177 210 IPR019734 GO:0005515
Rops8g03514 849 SMART tpr_5 354 387 IPR019734 GO:0005515
Rops8g03514 849 SMART tpr_5 286 319 IPR019734 GO:0005515
Rops8g03514 849 SMART sel1 177 208 IPR006597 -
Rops8g03514 849 SMART sel1 388 419 IPR006597 -
Rops8g03514 849 SMART sel1 320 351 IPR006597 -
Rops8g03514 849 SMART sel1 286 317 IPR006597 -
Rops8g03514 849 ProSiteProfiles TPR repeat region circular profile. 177 208 - -
Rops8g03514 849 Pfam Tetratricopeptide repeat 320 353 IPR001440 GO:0005515
Rops8g03514 849 Pfam Tetratricopeptide repeat 177 208 IPR001440 GO:0005515
Rops8g03514 849 Pfam Tetratricopeptide repeat 211 244 IPR001440 GO:0005515
Rops8g03514 849 Gene3D Tetratricopeptide repeat domain 150 213 IPR011990 GO:0005515
Rops8g03514 849 Pfam Tetratricopeptide repeat 355 416 - -
Rops8g03514 849 SUPERFAMILY TPR-like 251 423 IPR011990 GO:0005515
Rops8g03514 849 ProSiteProfiles TPR repeat profile. 286 319 IPR019734 GO:0005515
Rops8g03514 849 Pfam Glycosyl transferase family 41 641 821 IPR029489 -
Rops8g03514 849 Pfam Glycosyl transferase family 41 467 624 IPR029489 -
Rops8g03514 849 SUPERFAMILY TPR-like 35 260 IPR011990 GO:0005515
Rops8g03514 849 ProSiteProfiles TPR repeat profile. 354 387 IPR019734 GO:0005515
Rops8g03514 849 PANTHER UDP-N-ACETYLGLUCOSAMINE--PEPTIDE N-ACETYLGLUCOSAMINYLTRANSFERASE SPINDLY-RELATED 27 844 - -
Rops8g03514 849 Gene3D Tetratricopeptide repeat domain 320 356 IPR011990 GO:0005515
Rops8g03514 849 Gene3D Tetratricopeptide repeat domain 357 476 IPR011990 GO:0005515
Rops8g03514 849 ProSiteProfiles TPR repeat region circular profile. 388 420 - -
Rops8g03514 849 ProSiteProfiles TPR repeat region circular profile. 320 352 - -
Rops8g03514 849 ProSiteProfiles TPR repeat profile. 177 210 IPR019734 GO:0005515
Rops8g03514 849 SUPERFAMILY TPR-like 357 787 IPR011990 GO:0005515
Rops8g03514 849 ProSiteProfiles TPR repeat profile. 211 244 IPR019734 GO:0005515
Rops8g03514 849 Gene3D Tetratricopeptide repeat domain 22 149 IPR011990 GO:0005515
Rops8g03514 849 ProSiteProfiles TPR repeat region circular profile. 211 243 - -
Rops8g03514 849 ProSiteProfiles TPR repeat profile. 143 176 IPR019734 GO:0005515
Rops8g03514 849 ProSiteProfiles TPR repeat profile. 68 101 IPR019734 GO:0005515
Rops8g03514 849 Gene3D Glycogen Phosphorylase B; 629 815 - -
Rops8g03514 849 ProSiteProfiles TPR repeat profile. 388 421 IPR019734 GO:0005515
Rops8g03514 849 ProSiteProfiles TPR repeat profile. 102 135 IPR019734 GO:0005515
Rops8g03514 849 Gene3D Tetratricopeptide repeat domain 214 319 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03514 Rops-Chr8 74717955 74741993 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03514 196 849 Glycosyltransferase AT3G11540 65.596 0.0 880
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03514 K09667 - gmx:100785784 1533.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03514 8 74717955 74741993 Rops8g03514 8 74717955 74741993 ECH