Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03500 ATGTACTACAACGGATTCTACCATCTATTTTATCAATACAACCCTAAAGGTTCTGTGTGGGGAAACATTGTGTGGGCCCATTCAGTATCAAAAGATCTTTTCAACTGGAAAGCACTTGAACCTGCCATTTACCCATCCAAACCCTTTGACAAATTCGGGTGTTGGTCCGGCTCAGCTACTATAGTCCCGGGTAAGGGACCCGTGATCCTCTATACCGGAATTGTTGATGAGAATGACACTCAAGTGCAATGTTATGCCATACCCGAAGATGCATCCGACCCACTTCTCAGAAAATGGATCAAGCCCAATAAGCTTAACCCGTTTGTGGTTGCAGATCAAGGTGTAAACGATAGTGCGTTTCGTGATCCAACAACTGCATGGAAGGGCAAGGATGGGCACTGGAGGATATTGGTTGGTAGCAAAAGGAAGCATAGAGGGATGGCATATCTGTATAAGAGCAAGGATTTTGTAAAATGGATCCGGGCCAAACACCCGATCCATTCAGCAACCACGGGTATGTGGGAGTGCCCCGATTTTTACCCGGTTTCATTGAGAGAGAAAGAGGGGTTGGACACATCTGAGGAAGGGAATCATGTTAAGCATGTATTAAAAAATAGCCTAGACATTACTAGGTTTGAGTTCTATACATTGGGAACGTATTTTCCGGATAAAGATAAGTATGTTCCTGATAACACTTCAGAGGATGATTGGGGTGGCCTTAGATATGACTATGGTAACTTCTATGCTTCAAAGTCATTTTTTGACCCAGGAAGGAACCGAAGGATCTTATGGGGTTGGGCAAACGAGTCTGATTCCAAGAGTGATGATGTTAAAAAAGGATGGGCAGGAATTCAGGCAATTCCAAGAACCGTTTGGCTTGATTCTTCTGGGAGACAATTGGTACAGTGGCCTGTTGAAGAATTGAATAAACTTAGAGGGAAAGAAGTTAATATGAACAACCAAAAACTTCAAAAGGAAGATTATGTTGAAGTAAAAGGAATAACTGCCGCTCAGGCAGATGTGGAAGTTACCTTCTCATTTTCAAGCTTGGACAAAGCAGAGGCATATGATCCTAGTTGGGTAAATGCACATGATCTCTGTGCGCAAAAAGGTTCAAAACTTCAAGGTGGGGTTGGACCCTTTGGGCTTCTTACTCTGGCTTCTAAAAAACTAGAGGAGTTCACTCCCGTGTTTTTCAGAATTTTCAAAGCTTCAAACAAGCATGTGATTCTCTTATGTTCCGATGCTAGGAGCTCCTCTTTGAAGAGTAACTTGTATAAGCCATCATTTGCTGGCTTTGTAGATGTGGACTTAACAACTAAGAAACTTTCTCTCAGGAGTTTGATTGATCACTCAGTAGTGGAGAGTTTTGGAGCAGGAGGGAAAACAAACATTTTATCTAGGGTTTATCCACAGCTAGCAGTGACAAATCAAGCTCATTTGTTTGTGTTCAACAACGGTACCGAGCCGATCACCGTGGAAAACCTCAAAGCATGGAGCATGAAATCTGCTAATATAAAATGA 1524 0.4245 MYYNGFYHLFYQYNPKGSVWGNIVWAHSVSKDLFNWKALEPAIYPSKPFDKFGCWSGSATIVPGKGPVILYTGIVDENDTQVQCYAIPEDASDPLLRKWIKPNKLNPFVVADQGVNDSAFRDPTTAWKGKDGHWRILVGSKRKHRGMAYLYKSKDFVKWIRAKHPIHSATTGMWECPDFYPVSLREKEGLDTSEEGNHVKHVLKNSLDITRFEFYTLGTYFPDKDKYVPDNTSEDDWGGLRYDYGNFYASKSFFDPGRNRRILWGWANESDSKSDDVKKGWAGIQAIPRTVWLDSSGRQLVQWPVEELNKLRGKEVNMNNQKLQKEDYVEVKGITAAQADVEVTFSFSSLDKAEAYDPSWVNAHDLCAQKGSKLQGGVGPFGLLTLASKKLEEFTPVFFRIFKASNKHVILLCSDARSSSLKSNLYKPSFAGFVDVDLTTKKLSLRSLIDHSVVESFGAGGKTNILSRVYPQLAVTNQAHLFVFNNGTEPITVENLKAWSMKSANIK* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03500 507 Pfam Glycosyl hydrolases family 32 C terminal 307 500 IPR013189 -
Rops8g03500 507 SMART glyco_32 1 461 IPR001362 GO:0004553|GO:0005975
Rops8g03500 507 SUPERFAMILY Concanavalin A-like lectins/glucanases 304 504 IPR013320 -
Rops8g03500 507 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE ISOENZYME CWINV1-RELATED 1 505 - -
Rops8g03500 507 Gene3D - 318 501 - -
Rops8g03500 507 FunFam Beta-fructofuranosidase, insoluble isoenzyme CWINV1 1 316 - -
Rops8g03500 507 SUPERFAMILY Arabinanase/levansucrase/invertase 1 305 IPR023296 -
Rops8g03500 507 Gene3D Glycosyl hydrolase domain; family 43 1 317 IPR023296 -
Rops8g03500 507 FunFam Beta-fructofuranosidase, insoluble isoenzyme CWINV1 316 501 - -
Rops8g03500 507 Pfam Glycosyl hydrolases family 32 N-terminal domain 1 304 IPR013148 -
Rops8g03500 507 CDD GH32_Fruct1-like 1 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03500 Rops-Chr8 74481744 74484014 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03500 1 502 Glycoside Hydrolase AT3G52600 66.473 0.0 682
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03500 K01193 - gmx:100777418 915.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03500 8 74481744 74484014 Rops8g03500 8 74481744 74484014 ECH