Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03494 ATGGAGGCAGTACTAGCATCCCGCCATTTTACCACTCCTTCCCCTTCTTTCTCTCACAACAACCGTACCCTCTGCTTTTCTTCTCCCAATTCAATCAAGCTTTCATCTCCTTCGATCCCCACTTCCTTCTCTAACAGAAACCAATTCACGAAAGAGATATGGGGTTGGGTACAGTCCAAGAGCGTGACTGTGAGAAGGGACATGCGTGGTGTGGTGAGGGCTGAAATGTTTGGCCAATTAACAAGTGGCCTTGAAGCCGCTTGGAACAAACTCAAAGGAGAAGAGGTTTTGTCCAAAGAGAACATTGTGGAACCTATGCGAGATATTAGGAGAGCTCTTTTAGAAGCTGATGTTAGTCTTCCTGTTGTCAGAAGGTTTGTGCAATCTGTCAGTGATCAGGCTGTGGGTGTTGGAGTCATTCGAGGAGTGAGACCAGATCAGCAATTGGTTAAGATTGTACATGATGAACTTGTGAAATTGATGGGTGGAGAGGTCTCTGAACTGGCTTTTGCCAAATCTGGGACCACTGTCATTTTATTGGCTGGACTCCAGGGAGTTGGGAAGACAACTGTTTGTGCGAAGTTGGCAAATTATCTCAAGAAACAGGGAAAGAGTTGCATGCTAGTCGCCGGGGATGTTTACAGACCTGCTGCTATTGACCAACTTGCTATTTTGGGTAAACAGGTGGATGTGCCTGTCTATACCGCAGGTACTGATGTTAAACCTTCAGAAATTGCTAAACAAGGTTTAGAAGAGGCCAAAAAGAAGAAAATTGATGTGGTTATTGTTGACACCGCTGGTAGGCTGCAGATAGACAGATCAATGATGGATGAGTTAAAAGAAGTGAAGCGGGCGTTGAATCCAACAGAAGTCTTGCTAGTCGTGGATGCAATGACAGGGCAAGAAGCAGCAGCCTTGGTGACTACTTTCAATCTTGAGATTGGAATAACAGGTGCCATCTTGACAAAACTAGACGGTGATTCAAGAGGCGGAGCAGCTTTGAGTGTCAAAGAGGTATCTGGAAAGCCAATTAAGCTGGTAGGACGGGGGGAACGCATGGAAGATCTTGAACCTTTCTACCCTGATCGAATGGCAGGACGCATACTAGGAATGGGAGATGTTCTTTCATTTGTTGAAAAGGCACAAGAAGTTATGCAACAAGAAGAAGCTGAAGAACTGCAGAAGAAGATCATGAGTGCAAAGTTTGACTTCAACGATTTTCTAAAGCAAACTCGTACTGTTGCACAAATGGGTTCTGTGTCTCGAGTCATTGGAATGATTCCTGGTATGGCGAAGGTTACTCCTGCTCAAATTCGAGAAGCAGAGAAGAATTTGAAGAATATGGAAGGAATGATAGAAGCGATGACCCCAGAGGAGAGGGAAAAACCAGAACTGTTGGCAGAATCCCCTGTCAGGAGGAAAAGAGTTGCTCAGGATTCAGGGAAAACGGAGCAGCAGGTAAGCCAACTTGTAGCTCAACTATTCCAAATGCGTGTTCGTATGAAGAACCTGATGGGTGTAATGGAAGGTGGATCAATGCCAACACTTAGTAATCTCGAGGAAGCACTTAAACCAGAGGAAAAGGCTCCACCTGGCACTGCAAGGAGGAGAAAGAGATCGGAATCAAGGAAACTATTTGCGGATTCAACATCAGCAAGGCCATCTCCTCGTGGTTTTGGGAGCAAAAATTGA 1692 0.4527 MEAVLASRHFTTPSPSFSHNNRTLCFSSPNSIKLSSPSIPTSFSNRNQFTKEIWGWVQSKSVTVRRDMRGVVRAEMFGQLTSGLEAAWNKLKGEEVLSKENIVEPMRDIRRALLEADVSLPVVRRFVQSVSDQAVGVGVIRGVRPDQQLVKIVHDELVKLMGGEVSELAFAKSGTTVILLAGLQGVGKTTVCAKLANYLKKQGKSCMLVAGDVYRPAAIDQLAILGKQVDVPVYTAGTDVKPSEIAKQGLEEAKKKKIDVVIVDTAGRLQIDRSMMDELKEVKRALNPTEVLLVVDAMTGQEAAALVTTFNLEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEEAEELQKKIMSAKFDFNDFLKQTRTVAQMGSVSRVIGMIPGMAKVTPAQIREAEKNLKNMEGMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSMPTLSNLEEALKPEEKAPPGTARRRKRSESRKLFADSTSARPSPRGFGSKN* 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03494 563 Pfam Signal peptide binding domain 401 499 IPR004125 GO:0006614|GO:0008312|GO:0048500
Rops8g03494 563 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 117 428 IPR027417 -
Rops8g03494 563 MobiDBLite consensus disorder prediction 457 487 - -
Rops8g03494 563 Gene3D - 79 380 IPR042101 -
Rops8g03494 563 SUPERFAMILY Signal peptide-binding domain 401 502 IPR036891 GO:0006614|GO:0008312|GO:0048500
Rops8g03494 563 SMART SRP54_3 175 370 IPR000897 GO:0005525|GO:0006614
Rops8g03494 563 MobiDBLite consensus disorder prediction 521 546 - -
Rops8g03494 563 SMART SRP54_N_2 76 161 IPR013822 GO:0005525|GO:0006614
Rops8g03494 563 ProSitePatterns SRP54-type proteins GTP-binding domain signature. 343 356 IPR000897 GO:0005525|GO:0006614
Rops8g03494 563 Pfam SRP54-type protein, helical bundle domain 80 157 IPR013822 GO:0005525|GO:0006614
Rops8g03494 563 CDD SRP_G 176 368 - -
Rops8g03494 563 FunFam Signal recognition particle 54 kDa subunit 166 359 - -
Rops8g03494 563 Gene3D - 381 505 IPR036891 GO:0006614|GO:0008312|GO:0048500
Rops8g03494 563 MobiDBLite consensus disorder prediction 516 563 - -
Rops8g03494 563 SMART AAA_5 174 321 IPR003593 GO:0016887
Rops8g03494 563 Hamap Signal recognition particle 54 kDa protein [srp54]. 80 517 IPR022941 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Rops8g03494 563 MobiDBLite consensus disorder prediction 457 480 - -
Rops8g03494 563 Pfam SRP54-type protein, GTPase domain 176 370 IPR000897 GO:0005525|GO:0006614
Rops8g03494 563 Gene3D - 165 359 IPR027417 -
Rops8g03494 563 PANTHER SIGNAL RECOGNITION PARTICLE 54K PROTEIN SRP54 76 509 IPR022941 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Rops8g03494 563 NCBIfam signal recognition particle protein 78 502 IPR004780 GO:0003924|GO:0005525|GO:0006614|GO:0048500
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03494 Rops-Chr8 74377509 74383050 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03494 K03106 - gmx:100782581 942.184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03494 8 74377509 74383050 Rops8g03494 8 74377509 74383050 ECH