Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03486 ATGGCGATGAAGAAGCTGCCGCTGAAACCAATCGCAAAACCAGCTGTTTCTTCTCCAAAGGTGAATCCTCTGAACCCTCCTCTTCCACCAAATGCATCTTTTTCCCTTCTTCCTCCTCCCACTCTCACCCTCACTCCAAACACCAACTACAATCACTTCCTTCACTTCCTCAACACCCATCTAACCCCTCCTTTAACCCCCGAAACCCTCACCCATTTCCTCAAAGCTAAGCTCCACCACCACCCTTCCTTCACCCACTACGATTTCCACATCTTCAACTGGGCCTCCGCCCTCGACACCTTCCGCCACAACCACACCTCCTTTCAATGGATGGCCCACACCCTCGCCCTCACCCACCGTTTCAACCACCTCAACACTCTCCTCACATTCATAGCCACCAACCCTTGCCCTTGCTCCAACGGCATCTTCTCTTGCCCTCAAACTGAACCCATTTTCCGTTTCGCCATTCAATCTTACTGTAAAGCTTCCAAATTGGACCACGCCCTCTTTGCATTTCGCACCATGCGTAGGTTAATCGATGGGAGACCTCATGTTTCCGTTTGTAATATTTTGCTTCATGGGTTTGTGAAATGTGGGATGCATGATAAAGCACTTGAATTTTATGATGAGATGGTCAGAGATAGGGTTAAGCCTGATGTGTTTACTTTTAACATTTTGATTAGTAGTTATTGTAGGAATTTTCAATTTGGGTTGGCTTTGGAGATGTTTGAGGAGATGAGGAAAATGGGGTGTGATCCAAATGTTGTTACTTTTAATACTTTGATTAAGGGGTTGTTTAGGGAGGGCAGGGTTGATGAAGGGATTGGGATGGTTCATGAGATGATTGAATTGGGGTGTCAACTTTCCAATGTTACTTGTGAGATCTTGGTTCATGGACTTTGTAAGGAAGGTAGGGTTTTGCAGGCGTGTGAACTATTAGTGGATTTTTCCAAGAGGGGGGTTTTGCCAAAAGGGTATGATTATTTTGTTTTGGTGGAGGTTTTGTGTGGAGAAGGAAATGCTATTGGAGCCTTGGAGTTTATTTATGAATTGTGGAACAATGCTAGTGTTCCGAGCTTGATTGCTTGTACTGTGATGGTTGATGGTTTGAGAAGATTGGGGAAGACTGAAGAAGCTCGGAGATTGGTGGAAAGAATGCTTAAAGAGGGCATGGTGCTGGATGTTGTGACTTTCAATTGTGTCCTTCAAGATATTTGCAATGAGGGAAGAACAGAAGATGCAAATAAATTGAGATTACTTGCTTCAAGCAAGGGTTTGGAACCAGATGGCATGACATATAAAATCTTGGTTAATGGGTATACGGAAGAGGGGAGTCGAAAGGAAGGAGAGTTGGTGGTAAATGAAATGTTGGATAGAGGGTTTATCCCTGATCTTGCTTCATATAATAAATTGATGAATGGACTATCTAATGGTCAACAACGCTCTCCATGTCATCGAGTCAACAAATTTGGCCGCTGA 1479 0.4415 MAMKKLPLKPIAKPAVSSPKVNPLNPPLPPNASFSLLPPPTLTLTPNTNYNHFLHFLNTHLTPPLTPETLTHFLKAKLHHHPSFTHYDFHIFNWASALDTFRHNHTSFQWMAHTLALTHRFNHLNTLLTFIATNPCPCSNGIFSCPQTEPIFRFAIQSYCKASKLDHALFAFRTMRRLIDGRPHVSVCNILLHGFVKCGMHDKALEFYDEMVRDRVKPDVFTFNILISSYCRNFQFGLALEMFEEMRKMGCDPNVVTFNTLIKGLFREGRVDEGIGMVHEMIELGCQLSNVTCEILVHGLCKEGRVLQACELLVDFSKRGVLPKGYDYFVLVEVLCGEGNAIGALEFIYELWNNASVPSLIACTVMVDGLRRLGKTEEARRLVERMLKEGMVLDVVTFNCVLQDICNEGRTEDANKLRLLASSKGLEPDGMTYKILVNGYTEEGSRKEGELVVNEMLDRGFIPDLASYNKLMNGLSNGQQRSPCHRVNKFGR* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03486 492 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 429 463 IPR002885 -
Rops8g03486 492 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 69 350 - -
Rops8g03486 492 NCBIfam pentatricopeptide repeat 221 255 IPR002885 -
Rops8g03486 492 NCBIfam pentatricopeptide repeat 432 464 IPR002885 -
Rops8g03486 492 NCBIfam pentatricopeptide repeat 362 395 IPR002885 -
Rops8g03486 492 NCBIfam pentatricopeptide repeat 187 220 IPR002885 -
Rops8g03486 492 NCBIfam pentatricopeptide repeat 256 288 IPR002885 -
Rops8g03486 492 NCBIfam pentatricopeptide repeat 291 323 IPR002885 -
Rops8g03486 492 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 289 323 IPR002885 -
Rops8g03486 492 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 219 253 IPR002885 -
Rops8g03486 492 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 254 288 IPR002885 -
Rops8g03486 492 Pfam PPR repeat 362 390 IPR002885 -
Rops8g03486 492 Pfam PPR repeat 187 215 IPR002885 -
Rops8g03486 492 Pfam PPR repeat 156 177 IPR002885 -
Rops8g03486 492 Pfam PPR repeat 291 321 IPR002885 -
Rops8g03486 492 MobiDBLite consensus disorder prediction 1 24 - -
Rops8g03486 492 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 359 393 IPR002885 -
Rops8g03486 492 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 394 428 IPR002885 -
Rops8g03486 492 Gene3D Tetratricopeptide repeat domain 344 420 IPR011990 GO:0005515
Rops8g03486 492 Gene3D Tetratricopeptide repeat domain 421 487 IPR011990 GO:0005515
Rops8g03486 492 Gene3D Tetratricopeptide repeat domain 89 247 IPR011990 GO:0005515
Rops8g03486 492 Gene3D Tetratricopeptide repeat domain 248 319 IPR011990 GO:0005515
Rops8g03486 492 Pfam PPR repeat family 218 265 IPR002885 -
Rops8g03486 492 Pfam PPR repeat family 394 440 IPR002885 -
Rops8g03486 492 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 184 218 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03486 Rops-Chr8 74294559 74296037 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03486 101 489 Miscellaneous Gene Families AT4G11690 24.878 6.76e-30 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03486 - - aprc:113860936 686.797