Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03452 ATGGTTTACACCATCTCTGGAATTCGATTTCCTGTTGTTCCTTCTCTGCACAAGTCGAGTTTCCATGGTGATCGCAGGACTGCACCTCTCGCATTTTTTCTCAGAAAGGATTCATTCGCTAGGACAGCCATTTCTGTAAAATCTTCCCATGATTCTGACTCCACATCTTCCATGATTGCTGAATCTGATAAAGGACTTATTCCTCAAGATCAAGATGATTCTGCATCCTTGACAGATCAACTTGATATAACCTCAGAGGATGCACAGAACTTAGAGGATTTAACCATGAAAGATGAGAATAAGTACAACCTTGATGAAGCAGCTGGCAGTTACAGAGAGGTTGAGGATGGGCAAGATTCTGTCATGTCATCACTTGGAGATGATAACACCAATGCTCAAGCCAAGACGACGTCAGTTTTAGATAGGAAAGTAACAATAGAAAGTGATGAAGTTAAACCTAAGATCATTCCCCCACCTGGTACTGGGCAGAAAATATATGAGATCGATCCACTTTTGCAGGCTCACCGCCAGCATCTTGATTTCCGTTATGGACAATACAAAAGATTGCGTGCAGAAATTGACAAGTATGAAGGTGGTCTGGATGCATTTTCTCGTGGTTATGAAAATTTTGGCTTCACACGCAGTGCTACAGGCGTTACATACAGAGAGTGGGCACCTGGAGCTAAGTCAGCAGCATTAGTTGGAGACTTCAACAATTGGAATCCAAATGCAGATGTAATGACCCGGAATGAGTTCGGTGTGTGGGAGATCTTCTTGCCAAACAATGTGGATGGTTCACCACCAATTCTTCATGGTTCTCGAGTCAAGATCCACATGGATACTCCATCTGGGATCAAGGACTCAATTCCTGCTTGGATCAAGTTCTCCGTACAGGCTCCTGGAGAAATTCCATATAATGGAATATACTATGATCCCCCAGAGGAGGAAAAATATGTCTTCAAACATCCACAGCCAAAGAAACCAAAATCAATTAGAATATATGAGTCACACGTTGGAATGAGTAGTCCGGAGCCAAAAATCAACACATATGTCAATTTTAGAGATGATGTACTACCTCGCATTAAAAGGCTTGGCTATAATGCTGTCCAGATTATGGCTATCCAAGAACATTCCTATTATGCTAGCTTTGGGTACCATGTTACTAATTTCTTTGCACCTAGCAGTCGGTTTGGAACTCCTGAAGAACTCAAGTCTCTGATAGACAGAGCCCATGAACTAGGTCTGCTTGTTCTGATGGATGTTGTACACAGCCATGCATCAAATAATACATTGGATGGGCTGAACATGTTTGATGGAACTGATAGTCATTACTTCCATCCTGGGTCACGGGGTTATCATTGGATGTGGGATTCTCGCCTTTTTAACTATGGAAGCTGGGAAGTTCTAAGGTATCTGCTTTCAAATGCAAGATGGTGGCTGGAAGAATACAAGTTTGATGGGTTTCGATTTGATGGTGTCACATCAATGATGTACACTCATCATGGATTGGAGGTATCTTTTACTGGAAATTACAGTGAGTATTTTGGTTATGCAACTGATGTTGATGCTGTGGTTTACCTGATGCTGGTCAATGATGTCATTCATGGGCTCTACCCTGAGGCTGTTATGATTGGTGAAGACGTCAGTGGAATGCCAACATTCTGCCTTCCTACGCCAGATGGTGGGGTTGGCTTTGACTATCGCCTGCAGATGGCAATTGCTGACAAGTGGATTGAGATTCTCAAGAAGAAAGATGAAGACTGGAAAATGGGCGATATAATCCACACACTCACAAACAGAAGGTGGCTGGAAAAATGTGTGGCTTATGCTGAAAGTCATGACCAAGCCTTGGTTGGTGACAAGACAATTGCATTTTGGTTGATGGACAAGGATATGTATGATTTCATGGCTTTAGACAGACCATCTACTCCTCTTATAGATCGTGGTATAGCATTACACAAGATGATTAGGCTTATTACTATGGGTCTTGGTGGTGAAGGGTATTTGAATTTTATGGGGAATGAATTCGGCCATCCTGAGTGGATTGATTTTCCAAGGGGTGATCAACATCTTCCTAATGGGAAAGTAGTTCCTGGAAATAACAACAGTTACGATAAATGCAGGCGTAGATTTGACTTGGGGGATGCAGTCTATCTAAGATATCGGGGGATGCAAGAATTTGACCAAGCTATGCAGCATCTAGAAGAAAGGTTTGGTTTCATGACTTCTGAGCACCAATATATTTCCCGGAAAAATGAAGGTGACAAAATTATAGTCTTTGAAAGGGGCAACCTCATCTTTGTCTTCAATTTTCATTGGACCAACAGCTATTCAGATTACAGAGTTGGCTGTTTAACCCCAGGGAAATACAAGATTGTCTTGGATTCAGATGACGCCTTGTTTGGTGGCTTCAATAGGCTCAATCACTCTGCTGAGTACTTCACCGCTGAAGGATGGTATGATGACCGACCTCGATCTTTTCTTGTGTATGCACCTTCTCGAACAGCAGTGGTGTACGCCCTTGCAGATGAAGAGGAACAAGAGCCGGAGCCGGAGCCGGAGCCAGAGCCAGTTGAACCCTGA 2583 0.429 MVYTISGIRFPVVPSLHKSSFHGDRRTAPLAFFLRKDSFARTAISVKSSHDSDSTSSMIAESDKGLIPQDQDDSASLTDQLDITSEDAQNLEDLTMKDENKYNLDEAAGSYREVEDGQDSVMSSLGDDNTNAQAKTTSVLDRKVTIESDEVKPKIIPPPGTGQKIYEIDPLLQAHRQHLDFRYGQYKRLRAEIDKYEGGLDAFSRGYENFGFTRSATGVTYREWAPGAKSAALVGDFNNWNPNADVMTRNEFGVWEIFLPNNVDGSPPILHGSRVKIHMDTPSGIKDSIPAWIKFSVQAPGEIPYNGIYYDPPEEEKYVFKHPQPKKPKSIRIYESHVGMSSPEPKINTYVNFRDDVLPRIKRLGYNAVQIMAIQEHSYYASFGYHVTNFFAPSSRFGTPEELKSLIDRAHELGLLVLMDVVHSHASNNTLDGLNMFDGTDSHYFHPGSRGYHWMWDSRLFNYGSWEVLRYLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLEVSFTGNYSEYFGYATDVDAVVYLMLVNDVIHGLYPEAVMIGEDVSGMPTFCLPTPDGGVGFDYRLQMAIADKWIEILKKKDEDWKMGDIIHTLTNRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPLIDRGIALHKMIRLITMGLGGEGYLNFMGNEFGHPEWIDFPRGDQHLPNGKVVPGNNNSYDKCRRRFDLGDAVYLRYRGMQEFDQAMQHLEERFGFMTSEHQYISRKNEGDKIIVFERGNLIFVFNFHWTNSYSDYRVGCLTPGKYKIVLDSDDALFGGFNRLNHSAEYFTAEGWYDDRPRSFLVYAPSRTAVVYALADEEEQEPEPEPEPEPVEP* 861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03452 860 Gene3D - 743 850 IPR013780 -
Rops8g03452 860 CDD E_set_GBE_euk_N 217 310 - -
Rops8g03452 860 SUPERFAMILY E set domains 203 312 IPR014756 -
Rops8g03452 860 Pfam Alpha amylase, catalytic domain 358 493 IPR006047 GO:0005975
Rops8g03452 860 CDD AmyAc_bac_euk_BE 314 729 - -
Rops8g03452 860 PANTHER 1,4-ALPHA-GLUCAN-BRANCHING ENZYME 135 843 - -
Rops8g03452 860 FunFam 1,4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic 205 317 - -
Rops8g03452 860 FunFam 1,4-alpha-glucan branching enzyme 312 738 - -
Rops8g03452 860 FunFam 1,4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic 743 843 - -
Rops8g03452 860 Pfam Alpha amylase, C-terminal all-beta domain 747 840 IPR006048 GO:0003824|GO:0005975|GO:0043169
Rops8g03452 860 SUPERFAMILY Glycosyl hydrolase domain 743 842 - -
Rops8g03452 860 Pfam Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 210 292 IPR004193 GO:0004553|GO:0005975
Rops8g03452 860 Gene3D Glycosidases 169 738 - -
Rops8g03452 860 SMART aamy 348 708 IPR006047 GO:0005975
Rops8g03452 860 PIRSF GlgB 75 851 IPR037439 GO:0003844|GO:0005978
Rops8g03452 860 Gene3D Immunoglobulins 205 317 IPR013783 -
Rops8g03452 860 SUPERFAMILY (Trans)glycosidases 321 735 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03452 Rops-Chr8 73822763 73853248 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03452 27 845 Glycoside Hydrolase AT5G03650 75.092 0.0 1302
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03452 K00700 - gmx:100785968 1579.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03452 8 73822763 73853248 Rops8g03452 8 73822763 73853248 ECH