Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03440 ATGTTCAACATGTCTGCAACTAACCACCAGCTCCAAGTTCTTCTAATCATTCTCGTCCTATCCCTTGAGATAACGTTGACATGTTTTGCAACCACTTCCATTCCAGAAGAGCTCCTCATAGGCTTCTCGGCAGTTCCTCACTCTAAAACGACGTCGTTTCAGGCTGTTTTGAACGACCCCACCGGCAACTTCTCTCTGGGGTTCCTCCGCCAGAACCAAAACCAGCTAGAACTAGCCGTGGTTCACGTGGCTTCCTCCGAGCCATTATGGGTCGCCAACCCAACGCGCTTGGCGGCGTGGGCCGACACCACGCGCCTCACCTTCAACGGCAGTCTCGTATTGCGGGACCCCCAAACTGGCGTGTCTTGGTCAACCGCCGCTACAAATGGTGACCGCTTGGTGCTCCTCAACACCTCCAACTTGCAAGTGCAAAACAAAGGTGGTTCTCCCCTGTGGGAAAGTTTCCATTTTCCCACAAATACCCTCGTCCAGGACCAGAATTTCACCACCAACATGTCTCTGGTGTCACCGAACGGTTTATACTCGTTACGGTTAGGCGACAATTTCATGGGCTTATACGCAAATTACGGCGAAGAAGAAGGAGGGTCGTTGAAGCGGTTATTATACTGGAAACACACTGCACTGGAAGCAAAAGCTGAAATAGAAGAAGGACAAGGACCGATTTACGCACGAGTCAACCCGGAGGGTTATCTTGGCATGTACCAAACAAGCGACAAGCCCGTTGACGTTGAGAAGTTCAACACTTTCCAACAGGCCTCTACAACGTCGTCGTTTCTGTTGGTGCGGTTAGAACCGGACGGGAATCTCAAGGGCTATTACTGGAACTCCTCTAACTGGTTGCTTAACTACCGAGCCATAACTGAAACCTGCGATTTGCCTAACCCCTGCGGTTCGTACGGTTTGTGCACTCCTGGAGGGTCTGGATGCTCCTGTTTGGATAACCGGACCCGGTTCGAACCGGGTGGGTGTTTGGCTGGAGTTAACGATGGTGGAGACTTGTGTGGAGAAAGGATCGGTGGAAACAGTTACTGGGAGCTGAGAAAGACCGGCGTGGAGCCGCCGCACAAGGAGTTACTCAGTCACGTAACGACGTCGTCTCTGGAAGACTGTGAGGGCTTGTGCCATAACAACTGTAGCTGTTTGGGGGCGTTGTATAACAACGCCACCGGGTTTTGTTACCTCTTGGACTACCCGATCCGAACCATGTTGGGTACCGGGGATGGGTCAAAGGTGGGTTATTTTAAGGTAAGAAAAGGTGGAGGAGGAAAGAATCGGGTTCGGGTTTGGGTCGGAGTCGTGGTTGCGGTTTTGGTTGGGGTTGTTATTATTATTGGGATTGGGGTTTTCGCGATGAGATGGAAGAGGAGGAAAGGGGTGAATGGGTTACTGAAGGAGGAAAATGGGGCTTCGCCCGGCCCGTATAGGAATCTAGGATCCGCAAGTTTTAGATCCATCGAAATGTGCAGCAGTAATGGCCGATAA 1503 0.515 MFNMSATNHQLQVLLIILVLSLEITLTCFATTSIPEELLIGFSAVPHSKTTSFQAVLNDPTGNFSLGFLRQNQNQLELAVVHVASSEPLWVANPTRLAAWADTTRLTFNGSLVLRDPQTGVSWSTAATNGDRLVLLNTSNLQVQNKGGSPLWESFHFPTNTLVQDQNFTTNMSLVSPNGLYSLRLGDNFMGLYANYGEEEGGSLKRLLYWKHTALEAKAEIEEGQGPIYARVNPEGYLGMYQTSDKPVDVEKFNTFQQASTTSSFLLVRLEPDGNLKGYYWNSSNWLLNYRAITETCDLPNPCGSYGLCTPGGSGCSCLDNRTRFEPGGCLAGVNDGGDLCGERIGGNSYWELRKTGVEPPHKELLSHVTTSSLEDCEGLCHNNCSCLGALYNNATGFCYLLDYPIRTMLGTGDGSKVGYFKVRKGGGGKNRVRVWVGVVVAVLVGVVIIIGIGVFAMRWKRRKGVNGLLKEENGASPGPYRNLGSASFRSIEMCSSNGR* 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03440 500 SUPERFAMILY Hairpin loop containing domain-like 368 405 - -
Rops8g03440 500 PIRSF SLG 1 437 IPR035446 -
Rops8g03440 500 Pfam S-locus glycoprotein domain 255 320 IPR000858 GO:0048544
Rops8g03440 500 SUPERFAMILY alpha-D-mannose-specific plant lectins 79 191 IPR036426 -
Rops8g03440 500 Pfam D-mannose binding lectin 89 173 IPR001480 -
Rops8g03440 500 Gene3D - 43 157 IPR036426 -
Rops8g03440 500 ProSiteProfiles PAN/Apple domain profile. 341 425 IPR003609 -
Rops8g03440 500 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 50 457 - -
Rops8g03440 500 SMART blect_4 48 158 IPR001480 -
Rops8g03440 500 ProSiteProfiles Bulb-type lectin domain profile. 42 156 IPR001480 -
Rops8g03440 500 Pfam PAN domain 368 403 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03440 Rops-Chr8 73605173 73607107 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03440 - - gmx:100814305 652.129
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03440 8 73605173 73607107 Rops8g03440 8 73605173 73607107 ECH