Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03431 ATGGCGGAGCACTTGGCATCGATATTCGGAACGGAGAAAGACAGAGTGAACTGTCCCTTCTACTTCAAGATCGGAGCTTGCAGGCATGGCGACCGTTGTTCCAGGCTTCACACTAAGCCCACAATCAGCCCCACTCTCGTTCTCTCCAACATGTACCAGAGACCCGACATGAACCTTAACATCATCACCAACCCAGATCAACCTCAATCTCAACCCCAACCCCTCGACCCCGAGAAGCTCCAAGATCACTTCGATGACTTTTATGAAGATCTCTTCGAGGAGCTCAGCAAGTACGGCCCAATTCAAAGCTTGAATATTTGTGACAATTTGGCCGATCACATGGTTGGGAATGTATATGTGCAGTATAAAGAGGAAGACCATGCCGCCAATGCCCTAATGAATCTCACTGGAAGATTTTATTCAGGTCGACCCATCATTGTTGACTTCTCTCCTGTTACGGATTTTCGAGAAGCAACTTGTAGGCAGTATGAGGAAAACGTATGCAATCGAGGTGGCTACTGCAACTTTATGCACTTGAAGAAGATTAGCAGGGAGTTGAGAAGGCGATTATTTGGAAGAAATAGGCGATGGAATGGCCGCAGTGGAAGCCGAAGCCCTCCAAGGAATCGTAATCATGAGGAGCGTTCTCATCCTGGTCGTGGTTCTGGTAGAAGAGATTTTGACAGGTCTTATGGCCACCATGGCGGCAGGAGGCCTAGAAGCCGTAGTCCTCGATATAGAGGAAGACGGAGTAGAAGTCCTGTGGGCAGGGATAGGAGTCCGATCAGAGAAAGTAGCGTAGAAAGGAGAGCTAGAATAGAGCAATGGAACAAGGAAAAGGAACAAGGAGACTCTGGTAACAGAAACGATGCAAATAACAATGATCATGAAGAACTGAGTGGTGCACAAAATGGTAGTAAATCTGGTAACCATCAGATATAG 942 0.4724 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPTISPTLVLSNMYQRPDMNLNIITNPDQPQSQPQPLDPEKLQDHFDDFYEDLFEELSKYGPIQSLNICDNLADHMVGNVYVQYKEEDHAANALMNLTGRFYSGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISRELRRRLFGRNRRWNGRSGSRSPPRNRNHEERSHPGRGSGRRDFDRSYGHHGGRRPRSRSPRYRGRRSRSPVGRDRSPIRESSVERRARIEQWNKEKEQGDSGNRNDANNNDHEELSGAQNGSKSGNHQI* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03431 313 PRINTS U2 auxiliary factor small subunit signature 37 57 IPR009145 GO:0000398|GO:0003723|GO:0089701
Rops8g03431 313 PRINTS U2 auxiliary factor small subunit signature 136 160 IPR009145 GO:0000398|GO:0003723|GO:0089701
Rops8g03431 313 PRINTS U2 auxiliary factor small subunit signature 109 131 IPR009145 GO:0000398|GO:0003723|GO:0089701
Rops8g03431 313 PRINTS U2 auxiliary factor small subunit signature 18 37 IPR009145 GO:0000398|GO:0003723|GO:0089701
Rops8g03431 313 PRINTS U2 auxiliary factor small subunit signature 171 183 IPR009145 GO:0000398|GO:0003723|GO:0089701
Rops8g03431 313 PRINTS U2 auxiliary factor small subunit signature 81 96 IPR009145 GO:0000398|GO:0003723|GO:0089701
Rops8g03431 313 Gene3D - 43 151 IPR012677 -
Rops8g03431 313 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 44 152 IPR000504 GO:0003723
Rops8g03431 313 PANTHER U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT 1 278 IPR009145 GO:0000398|GO:0003723|GO:0089701
Rops8g03431 313 SMART rrm2_1 73 148 IPR003954 GO:0003676
Rops8g03431 313 MobiDBLite consensus disorder prediction 251 295 - -
Rops8g03431 313 ProSiteProfiles Zinc finger C3H1-type profile. 12 40 IPR000571 GO:0046872
Rops8g03431 313 MobiDBLite consensus disorder prediction 235 250 - -
Rops8g03431 313 FunFam Splicing factor U2AF small subunit 45 151 - -
Rops8g03431 313 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 89 145 IPR000504 GO:0003723
Rops8g03431 313 ProSiteProfiles Zinc finger C3H1-type profile. 154 181 IPR000571 GO:0046872
Rops8g03431 313 SUPERFAMILY RNA-binding domain, RBD 83 155 IPR035979 GO:0003676
Rops8g03431 313 SMART rrm1_1 45 148 IPR000504 GO:0003723
Rops8g03431 313 MobiDBLite consensus disorder prediction 196 313 - -
Rops8g03431 313 SMART c3hfinal6 13 39 IPR000571 GO:0046872
Rops8g03431 313 SMART c3hfinal6 154 180 IPR000571 GO:0046872
Rops8g03431 313 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 14 37 IPR000571 GO:0046872
Rops8g03431 313 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 156 179 IPR000571 GO:0046872
Rops8g03431 313 MobiDBLite consensus disorder prediction 296 313 - -
Rops8g03431 313 MobiDBLite consensus disorder prediction 206 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03431 Rops-Chr8 73459939 73462209 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03431 K12836 - gmx:100811622 474.167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03431 8 73459939 73462209 Rops8g03431 8 73459939 73462209 ECH