Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03411 ATGGAGGCACTCTTCCAACCCAATTATCATTTCTCCTCTTTCCACTTGAAACCACCATCCCCTCCACCCCTTTCTTCTTCTTCTTCTTCTTTTCTCCACTTCCCTCTTCCCCTCAAAACCTCCAAAACCCACCATGCCATTTCCCTTCACTCTCCTCCACCACCACCATCGCAACCACAACCTTTCCAAGACACCTCCCTCTTCCTCTTTTTCCTCCGCATCTCTTCCCGCCACCGCGACACCAACCTCGCCAAAGCCATCCACGCCTCCCTCCTCAAACTCCCCGAAGAAGACACTCACCTCTCCACCGCCCTCATCACCACCTACATCAACCTCAACCTCTTATCTCACGCCCACCGTCTCTTCCTCTCCCTCTCTTCCCCCAACGTTGTCTCTTACTCCGCTATCATTTCCGCTTTCTCCAAATCCCGTCGAGAACGCCAAGCTCTTAACCTCTTCTTCCACATGTTAGCTTCTGATATTCCCCCCAACGAGTACACCTACGTCGCCGTTTTAACCGCTTGCATCAGAATCCTCCACTTCCAACTTGGCCTCCAGTTACACGCCGCAGTCATCAAAACCGGGCATTTGGAATCCGTTTTTGTTTCCAACGCGCTTATGTGTCTCTATGCAAAGTGCGGGTATTACAAATCCATGTTCAACCTGTTTGATGAAATGCCTCAAAGAGATATCGCGTCATGGAACACCGTTATGTCGGGTTCCGTGAATGAGTTTATGTACGGAACGGCGTTTAACTTGTTCCGTGAAATGCAAGCAACTGATGCATTGAAAGTTGATTATTTTACGTTGTCAACGCTTCTCACCGCGTGTGCTGGGAGTGCTTCTGTGATGGAAGGGAGGCAAGTACATGGGCATGCTGTTAAGGTTGGGTTGGACACTGAGTTGAATGTTGGGAATGCACTTATTGGGTTCTACACAAAGTGTGGAACTTTTTATGACGTGGTATGGTTGTTTGAGAGGATGAGTGTCAAAGATGTTATAACTTGGACGGAGATGATAACGGCGAATATGGAGTTTGGTTTGGTGGATTTGGCTGTGAAAGGGTTTGATGAGATGCCGGAGAAGAATTCCGTGTCTTATAATGCTCTCTTGTCTGGGTTTTGTCGAAATGGTGAAGGTTTAAAGGCTCTGGATTTGTTTATAAGGATGGTGGGTGAGGGGTTGGAGTTAACGGATTTCTCTTTGACTAGTGGGATTAATGCTTGTAGTTTGATTGCTGATTACGGGGTCTGCAAGCAGATTCATGGTTTTGCACTCAAGTTTGGTTTTGGATCAAATGCTTGTGTTGAAGCTGCGTTGCTTGATATGTACACAAGGTGTGGGAGGATGGTAGATGCCAAGAAGATTTTCTGCAATTGGGAGTTAGAGGAATTTGAGTCTGTCGCTTGGACATCTATGATATGTGGCTATGCAAGAAATGGGCAACCGGATGAGGCAATTTCTCTCTTCCACCTTGGTCAATCAGAAGGGAAAATGACTATGGATGAAGTTGCATCAACTTCAATGCTTGGTCTTTGTGGAACTGTTGGTTATCATGATATGGGTAAGCAAATCCACTGCCAAGTTCTTAAATTTGGCTTTCAATCTAACTTGGGAGTTGGAAATGCTGTTGTCAGCATGTATTTTAAGTGTGGCAATGTGGATGATGCAATTAAGATGTTTAATGATATGCCCTCTACTGATATAGTTTCATGGAATACTTTGATTTCTGGCTATCTCATGCACAGACAAGGTGATAGAGCATTGCAAATATGGTCGAAAATGCAGGAGGAGGGTATTAAGCCTGATGAAGTTACATTTGTTTTGATAATTTCAGCTTACAGGCAAACTAACTTGAATTTGGTTGATGAGTGTCGTTGTTTGTTTAATTCAATGAAAACTGTTTATCACATTGAGCCCACTTCCGAGCATTATTCCTCCTTCATCAGTGTTTTGGGTCACTGGGGTCTTCTGGATGAAGCACTGGAAACTATCAATAAGATGCCTTTTGAGCCTTCTGCTTCTGTTTGGCGTGCTTTGCTTTATAGTTGCAGGCTACATAAGAATACAGTGATTGGAAAATGGGCTGCTAAGAAGATTATTGCCCTGCAACCTAATGATCCATCTACCTTCATACTTGTTTCAAATTTGTATTCTGCTTCTGGGAGATGGGACCGCTCTGAAATGGTCAGGGAGAATATGAGAGAAAAAGGATTTCGCAAGCACCCAGCTCAGAGTTGGATAATTTGTCAGAAGAAAATACATTCATTCTATGCAAGGGATAGATCACATCCACAAGAGAAAGACATATATAGAGGATTGGAGATTCTAATTTTGGAGTGCCTAAAAGTTGGATATGAACCTAACACGAGCCTTGTTCTCCATGAAGTAGAGGAGCATCATAAGAAAAATTTTCTATTCCATCACAGTTCAAAACTGGCAGCAACTTATGGAATACTGATGACCAAGCCAGGAATGCCCATTCGGATTGTAAAGAATGTCCTTCTTTGTGGGGACTGCCATACATTCTTTAAATATGTATCGATTGTCACTGAGAGGGATATTCTTCTTAGAGATTCTTCAGGATTTCATTGTTTCTCTAATGGCCAGTGCTCGTGTAAAGACTACTGGTGA 2634 0.4366 MEALFQPNYHFSSFHLKPPSPPPLSSSSSSFLHFPLPLKTSKTHHAISLHSPPPPPSQPQPFQDTSLFLFFLRISSRHRDTNLAKAIHASLLKLPEEDTHLSTALITTYINLNLLSHAHRLFLSLSSPNVVSYSAIISAFSKSRRERQALNLFFHMLASDIPPNEYTYVAVLTACIRILHFQLGLQLHAAVIKTGHLESVFVSNALMCLYAKCGYYKSMFNLFDEMPQRDIASWNTVMSGSVNEFMYGTAFNLFREMQATDALKVDYFTLSTLLTACAGSASVMEGRQVHGHAVKVGLDTELNVGNALIGFYTKCGTFYDVVWLFERMSVKDVITWTEMITANMEFGLVDLAVKGFDEMPEKNSVSYNALLSGFCRNGEGLKALDLFIRMVGEGLELTDFSLTSGINACSLIADYGVCKQIHGFALKFGFGSNACVEAALLDMYTRCGRMVDAKKIFCNWELEEFESVAWTSMICGYARNGQPDEAISLFHLGQSEGKMTMDEVASTSMLGLCGTVGYHDMGKQIHCQVLKFGFQSNLGVGNAVVSMYFKCGNVDDAIKMFNDMPSTDIVSWNTLISGYLMHRQGDRALQIWSKMQEEGIKPDEVTFVLIISAYRQTNLNLVDECRCLFNSMKTVYHIEPTSEHYSSFISVLGHWGLLDEALETINKMPFEPSASVWRALLYSCRLHKNTVIGKWAAKKIIALQPNDPSTFILVSNLYSASGRWDRSEMVRENMREKGFRKHPAQSWIICQKKIHSFYARDRSHPQEKDIYRGLEILILECLKVGYEPNTSLVLHEVEEHHKKNFLFHHSSKLAATYGILMTKPGMPIRIVKNVLLCGDCHTFFKYVSIVTERDILLRDSSGFHCFSNGQCSCKDYW* 878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03411 877 Gene3D Tetratricopeptide repeat domain 179 290 IPR011990 GO:0005515
Rops8g03411 877 Gene3D Tetratricopeptide repeat domain 619 765 IPR011990 GO:0005515
Rops8g03411 877 Gene3D Tetratricopeptide repeat domain 485 618 IPR011990 GO:0005515
Rops8g03411 877 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 466 500 IPR002885 -
Rops8g03411 877 Pfam DYW family of nucleic acid deaminases 785 877 IPR032867 GO:0008270
Rops8g03411 877 Gene3D Tetratricopeptide repeat domain 291 415 IPR011990 GO:0005515
Rops8g03411 877 Gene3D Tetratricopeptide repeat domain 62 178 IPR011990 GO:0005515
Rops8g03411 877 FunFam Pentatricopeptide repeat-containing protein103 619 769 - -
Rops8g03411 877 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 363 397 IPR002885 -
Rops8g03411 877 FunFam Pentatricopeptide repeat-containing protein103 518 618 - -
Rops8g03411 877 FunFam Pentatricopeptide repeat-containing protein At5g03800 286 418 - -
Rops8g03411 877 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 568 602 IPR002885 -
Rops8g03411 877 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 199 233 IPR002885 -
Rops8g03411 877 NCBIfam pentatricopeptide repeat 468 492 IPR002885 -
Rops8g03411 877 NCBIfam pentatricopeptide repeat 131 165 IPR002885 -
Rops8g03411 877 NCBIfam pentatricopeptide repeat 542 570 IPR002885 -
Rops8g03411 877 NCBIfam pentatricopeptide repeat 365 398 IPR002885 -
Rops8g03411 877 NCBIfam pentatricopeptide repeat 570 604 IPR002885 -
Rops8g03411 877 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 707 741 IPR002885 -
Rops8g03411 877 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 129 163 IPR002885 -
Rops8g03411 877 Pfam E motif 687 748 IPR046848 -
Rops8g03411 877 Pfam PPR repeat family 362 409 IPR002885 -
Rops8g03411 877 Pfam PPR repeat family 128 176 IPR002885 -
Rops8g03411 877 Pfam PPR repeat family 568 614 IPR002885 -
Rops8g03411 877 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 346 814 IPR046960 GO:0003723|GO:0009451
Rops8g03411 877 Pfam PPR repeat 233 258 IPR002885 -
Rops8g03411 877 Pfam PPR repeat 468 492 IPR002885 -
Rops8g03411 877 Pfam PPR repeat 644 668 IPR002885 -
Rops8g03411 877 Pfam PPR repeat 306 331 IPR002885 -
Rops8g03411 877 Pfam PPR repeat 204 230 IPR002885 -
Rops8g03411 877 Pfam PPR repeat 542 565 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03411 Rops-Chr8 73184735 73187676 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03411 64 877 Glycoside Hydrolase AT3G49170 34.262 1.59e-158 483
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03411 - - gmx:100784704 1234.94