Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03410 ATGGACGCACCTCGTAAACACCAGGTATCGTTGAGAGGAGCAAGTGCGAAGGAGATAACGAGAGATGACCTTCTTCAGAAGGTCTCTCGGGAAAGAGAGCTTCGCAATTATGCCAAACGAGCTGCTGCTGCTGCTCTCTTCATTCAGAGAGTGTGGAGGCGCTTCAAGGTTACAAAGATGGTTGCTCTGCAGCTTCAGCAGCAGTGGGAGACATTGGTGAATCATTATAGTGGGGTGATGACAGCAATTTGGATTTCAAACAATTTGTTGAGACCATTTCTGTTCTTTATGACCCGCTTATCAACCAGGCATCAGAAGGTCCATAGCAAGAAAATAGACTCTATGAAGACGTGCTTTACAATATTATTGGAAAGCCTGAAATCTTCTGATTCAAAGCGGAACTTTTGCTTTCTGGCAATTGGTACAACTGAAGAGAGAAGAATATGGAGTTACCAGGTGCGGCAGCTGACTTGTCTTGGTTTTTTGATTCTTTCAGAGTATAGTGAATGTGATTCAGGAGCTCAAGATATTACTACTGTTACATCCCTAGCTATGCGTATTCTTGTTATGTTAACTGATCTGAAAGGATGGAAAGGCATCATTACAGATGACAACCGCTTAGATGCAGATGTAGCGGTGAAAGATTTAGTTCAGTTCATGGGGAGTAATAAAAGCGGTAGTTATGTTTCTATTGCCAGATATATTAGTGCATTGGATAATTATTCTTCTCAGACAAAAATTATCACCCAGGCAGATGAAATCTTTTTTATTACTGCAAGTGCAATAACTTTAGCTGTGCGGCCATTTTATCTGACAAACCTTGATGTAGAAGGGCCTGGTATGCTGGATGTCAATCATGCTGCTAAGCAGTATACTGTATATATGCTGACTATTCCTTGGCTTGTGCAACATCTCCCACCTGTTCTTCTACCTGCTTTAAAGCACAGATCTATTTTGTTCCCATGCTTCCAGATTCTATTGATTTTGAAAGAGAATGTTTTAATGGAGATGTCAGAGTTGGTAAAGTCGGAGATTCTTGTCTCTTTCAAGGCAATTCCACCAGTTGGTTGGGCTCTCACTAACGTTATATGCCTAGCAACAGGGAATGACAATGATTCTGTAGACTCTGGATCCTTCAATCAAGGTTTAGACCATGCATTTTATGTCCATGTTGCGATCACTCTAGCTGAAAGCCTACTGGCCTGTCTTGATAATGATGGATGGCTCAGAAAGAAGAAGAAATCCCTTCAAACTGATGTTGAAAGTTCAACACAATCAGTTGATACGGTTCTGCATGAGGGTGAAGCAACCTACGAGTCATTAATAATGTCATACATAGATCAGTTTAGGCCTGTTTTTCAGCAGTGGCATCTCACAAATCTTTTGGCATCAATCAATAGAGATGCATCTAACAAGGCTGAGAGTTTGCTCTCAAATAGTCCGGAATGTTTGGGGAAGCTAGATTTGTATGATGTTGCACTTTTTTATTCTAGCTTAATTAGAATATTTTCGGCCTTGAGTCCAATTCGTGGCGTATTACCAGTTCTCAACATGCTATCATTCACTCCTGGATTTATTGTGAGATTGTGGGGTGTACTGGAGAATTCCTTTTTCTCTGAAGACAAACATATTTCTGATAAACACAGAAGTGAAAATGGAAAAAATAAAGATTTTGAGAAGATGCAAAAACAGGTAAGTAAAGATGGGGCTAATAAGTGGGTCAGCGTATTTCATAAATTTACAGGTAAGTCACAAACTGCAACAGATTGTACAGATCCCATAGGCAGTTGTTCTGAGCCTAGTGGAGTGAATGAGGATTCATCAGATGTATGGGACATAGAACCTATGAAACATGGCCCACAAGGCATTCCAAAGGATATGTTTGCTATGCTTCATCTTTTCTGTGTGACCTATTCTCATCTGCTTTTAGTTCTTGATGACATAGAGTTTTATGAGAAACAGGTTCCATTCAAATTAGAGCAGCAACGAAGAATTGCATCATTGCTCAATACCCTAGTGTATAATGGCTTGTCCCATGTTAGTGGTCATCATAATAGGCCCCTCATGGATTGTGCTGTCAGATGCTTACATTTAATGTATGAAAGGGATTGCAGACACCCATTTTGCCCTCCTGATTTGTGGCTTTCCCCTGCTAGAAAAAGCCGGCCACCAATTGCAGTTGCAGCCAGAACTCATGAAATTTTATCAGCCAACCTGAGATCTGATGATTCATCAGCTTCCCTGAGTGTAGGTTCTGTTATCACCGTGACTCCTCATGTTTTCCCTTTCGAAGAGAGAGTTGAGATGTTTCGTGAATTCATCAAGATGGATAAAGCCTCCCGAAAAATGGCTGGTGAAATTTCTGAACCTGGTTCACGAGCCATTGAGATAGTAGTACGTCGGGGTCATATTGTTGACGATGGATTTCGGCAATTAAATTCACTGGGGTCAAGGTTGAAGTCATCCATCCATGTATCATTTGTCAGTGAATGTGGCCTTGTGGAGGCTGGCCTGGACTATGGTGGATTATCTAAAGAGTTTTTAACTGACATATCAAAAGCAGCATTCGCCCCTGAATATGGACTTTTTTCCCAGACCTCAACTTCAGACAGGCTTCTAATTCCAACTGCATCTGCAAGATTTTTGGACAATGGTCTTCAGATGATTGAGTTCCTTGGAAGAGTAGTTGGTAAAGCTCTTTATGAAGGAATATTACTTGATTACTCCTTCTCGCATGTTTTTGTACAAAAACTATTGGGACGATATAGCTTTCTTGATGAATTATCAACACTTGATCCAGAGCTATACCGGAGTCTTATGTATGTCAAGAATTATGATGGTGATATCAAGGAGCTCTCTCTTGATTTCACAGTTACTGAAGAATCATTTGGCAAAAGGCATGTGGTTGAGCTCAAGTCTGGTGGCAAAGATATTTCAGTGACAAATGAGAACAAGATGCAGTACATACATGCAATGGCAGACTACAAACTCAACCAACAGATACTTCCCTTTTCAAATGCATTTTATAGAGGGTTAACTGATCTTATATCTCCATCCTGGTTGAAGTTATTCAATGCCAGTGAATTTAATCAGTTGCTTTCAGGTGGCAATTATGATATTGACATTGATGATTTTAAGAACAATACACGATACACCGGTGGTTATAATGCGGGAAGCCGGACAATCAAGATCTTTTGGGAGGTGATTAAAGGCTTTGAACCAAAAGAGCGTTGTATGCTTCTTAAATTTGTCACCAGTTGTTCTCGTGCTCCATTACTTGGGTTCAAATACTTGCAGCCACCTTTTACCATCCATAAGGTTGCTTGTGATGTCCCTCTTTGGGCAACAATTGGAGGACAAGATGTAGAGCGGCTTCCATCAGCTTCAACCTGCTACAATACTCTTAAGCTTCCAACATACAAACGTCCAGGCACTTTGAGAACAAAGCTTCTATATGCTATTAGTTCAAATGCTGGATTTGAACTTTCTTGA 3492 0.4052 MDAPRKHQVSLRGASAKEITRDDLLQKVSRERELRNYAKRAAAAALFIQRVWRRFKVTKMVALQLQQQWETLVNHYSGVMTAIWISNNLLRPFLFFMTRLSTRHQKVHSKKIDSMKTCFTILLESLKSSDSKRNFCFLAIGTTEERRIWSYQVRQLTCLGFLILSEYSECDSGAQDITTVTSLAMRILVMLTDLKGWKGIITDDNRLDADVAVKDLVQFMGSNKSGSYVSIARYISALDNYSSQTKIITQADEIFFITASAITLAVRPFYLTNLDVEGPGMLDVNHAAKQYTVYMLTIPWLVQHLPPVLLPALKHRSILFPCFQILLILKENVLMEMSELVKSEILVSFKAIPPVGWALTNVICLATGNDNDSVDSGSFNQGLDHAFYVHVAITLAESLLACLDNDGWLRKKKKSLQTDVESSTQSVDTVLHEGEATYESLIMSYIDQFRPVFQQWHLTNLLASINRDASNKAESLLSNSPECLGKLDLYDVALFYSSLIRIFSALSPIRGVLPVLNMLSFTPGFIVRLWGVLENSFFSEDKHISDKHRSENGKNKDFEKMQKQVSKDGANKWVSVFHKFTGKSQTATDCTDPIGSCSEPSGVNEDSSDVWDIEPMKHGPQGIPKDMFAMLHLFCVTYSHLLLVLDDIEFYEKQVPFKLEQQRRIASLLNTLVYNGLSHVSGHHNRPLMDCAVRCLHLMYERDCRHPFCPPDLWLSPARKSRPPIAVAARTHEILSANLRSDDSSASLSVGSVITVTPHVFPFEERVEMFREFIKMDKASRKMAGEISEPGSRAIEIVVRRGHIVDDGFRQLNSLGSRLKSSIHVSFVSECGLVEAGLDYGGLSKEFLTDISKAAFAPEYGLFSQTSTSDRLLIPTASARFLDNGLQMIEFLGRVVGKALYEGILLDYSFSHVFVQKLLGRYSFLDELSTLDPELYRSLMYVKNYDGDIKELSLDFTVTEESFGKRHVVELKSGGKDISVTNENKMQYIHAMADYKLNQQILPFSNAFYRGLTDLISPSWLKLFNASEFNQLLSGGNYDIDIDDFKNNTRYTGGYNAGSRTIKIFWEVIKGFEPKERCMLLKFVTSCSRAPLLGFKYLQPPFTIHKVACDVPLWATIGGQDVERLPSASTCYNTLKLPTYKRPGTLRTKLLYAISSNAGFELS* 1164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03410 1163 CDD HECTc 795 1161 IPR000569 GO:0004842
Rops8g03410 1163 Pfam HECT-domain (ubiquitin-transferase) 850 1163 IPR000569 GO:0004842
Rops8g03410 1163 Gene3D Hect, E3 ligase catalytic domains 797 1035 - -
Rops8g03410 1163 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 6 1163 IPR044611 GO:0000209|GO:0061630
Rops8g03410 1163 FunFam E3 ubiquitin-protein ligase UPL7 1038 1162 - -
Rops8g03410 1163 FunFam Putative Ubiquitin-protein ligase E3C 921 1000 - -
Rops8g03410 1163 Gene3D Hect, E3 ligase catalytic domain 921 1000 - -
Rops8g03410 1163 Gene3D Hect, E3 ligase catalytic domain 1038 1162 - -
Rops8g03410 1163 ProSiteProfiles HECT domain profile. 819 1163 IPR000569 GO:0004842
Rops8g03410 1163 SMART hect_3 813 1163 IPR000569 GO:0004842
Rops8g03410 1163 SUPERFAMILY Hect, E3 ligase catalytic domain 795 1156 IPR035983 GO:0004842
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03410 Rops-Chr8 73169257 73182616 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03410 K10588 - gmx:100527169 2021.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03410 8 73169257 73182616 Rops8g03410 8 73169257 73182616 ECH