Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03400 ATGTTCAGATTCTGGGGATCACAAGAGCAACAATCGCAAGATGGTTCTTCACAGTCATGGTATCCACCATCGGTGATGAGTTCATCGAGTTCTTCAAGGCCTGCTACACCTACTTCCTCTTCCTCTTCACCGAGGCCTTCTTCTCATGTTCCACCTGCTGAAGCCGCTGGAGTTATTGCTGCTTTGAAGGATAAGAGTGTTGATGAGTTACGGAAGCTTTTATCCGACAAAGATGCGTATCAACAGTTTTTACATTCACGTGATCAGGTCAAGATTCAAACCAATCTGAAAGATGAACTTTGCAAGGAGAATTTGCAGCTTGCAGAGGAAAATCTGCAAAAGGAACCTCGTATCATAGAACTTAGGAATCAATGTAGAATAATTCGGACCACCGAATTAGCTGCTGCTAAGGAGAAACTAAATGAGCTTGAGAAGCAGAAAGAAGAAATATTGAAATTGAATTCTCCAGCATCCCTTCTCCAAAGGATTCAAGAGTCTATAAATAAGACAGATGAGGAATCTGAAAATCTGCACCAGAATCTCCTTGACAGAGAGATTGACCTTGGAGCTTTTTTGCAGAAATACAAGAAGCTGCGTACCACTTACCACAAGAGAACTCTTATACATCTTGCTGCTAAAACATCATCTATATGA 654 0.4128 MFRFWGSQEQQSQDGSSQSWYPPSVMSSSSSSRPATPTSSSSSPRPSSHVPPAEAAGVIAALKDKSVDELRKLLSDKDAYQQFLHSRDQVKIQTNLKDELCKENLQLAEENLQKEPRIIELRNQCRIIRTTELAAAKEKLNELEKQKEEILKLNSPASLLQRIQESINKTDEESENLHQNLLDREIDLGAFLQKYKKLRTTYHKRTLIHLAAKTSSI* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03400 217 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 37 11 215 - -
Rops8g03400 217 MobiDBLite consensus disorder prediction 1 52 - -
Rops8g03400 217 Coils Coil 160 180 - -
Rops8g03400 217 SUPERFAMILY Endosomal sorting complex assembly domain 156 205 IPR037202 -
Rops8g03400 217 Coils Coil 126 153 - -
Rops8g03400 217 MobiDBLite consensus disorder prediction 1 48 - -
Rops8g03400 217 Pfam Modifier of rudimentary (Mod(r)) protein 63 207 IPR009851 -
Rops8g03400 217 ProSiteProfiles VPS37 C-terminal domain profile. 137 217 IPR009851 -
Rops8g03400 217 Gene3D Helix hairpin bin 141 210 IPR029012 -
Rops8g03400 217 FunFam Vacuolar protein-sorting-associated protein 37 homolog 1 141 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03400 Rops-Chr8 73077823 73080885 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03400 K12185 - gmx:100779019 305.449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03400 8 73077823 73080885 Rops8g03400 8 73077823 73080885 ECH