Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03360 ATGGCTCTCTTTCTCTTTGCTATTTTAATCTTGATGGCCCCTTCATCAAGCAATGCCTACTGGCCACCTTCACCTGGCTACTGGCCAAGTTCCAAATTCAGGTCTATGAGCTTTCACAAAGGATTTAGAAACCTCTGGGGCTCTCAGCACCAAAGACTAGACCAAAGTGCATTAACAATTTGGCTTGATAGAACCTCAGGAAGTGGCTTCAAATCAGTACGTCCATTTCGATCCGGGTACTTTGGTGCTTCCATTAAGCTCCAACCTGGTTATACTGCAGGAGTTATAACAGCTTTCTATCTTTCAAACAATGAAGCACATCCTGGTTTCCATGATGAAGTGGACATTGAGTTTCTTGGGACTACATTTGGAAAGCCTTATACTTTGCAGACCAATGTTTATATAAAAGGGAGTGGAGATGGGAGAATTATAGGTAGAGAGATGAAGTTCCATCTTTGGTTTGATCCTACCAAAGATTTTCATCACTATGCTATACTGTGGAGTCCTAAGGAAATAATATTCCTTGTGGATGATGTGCCTATAAGGAGGTACCCGAGGAAGAGTGCTGCAACATTTCCACTGAGACCAATGTGGCTTTATGGTTCAATATGGGATGCATCATCATGGGCAACAGAAGATGGAAAATACAAAGCTGATTATAGATATCAACCTTTTGTTGCAAAATATACCAATTTCAAAGCTAGTGGTTGTTCAGCCTTTGCTCCTCGTTGGTGCCATCCAGTTTCAGCTTCACCATATCGTTCTGGTGGATTGACATCACAACAATATAGAGCCATGAAATGGGTGCAAAGATACCACATGGTTTATAATTATTGTCAAGACCCCAAAAGAGATCATAGACTAACACCTGAGTGCTGGGGTTAA 885 0.4147 MALFLFAILILMAPSSSNAYWPPSPGYWPSSKFRSMSFHKGFRNLWGSQHQRLDQSALTIWLDRTSGSGFKSVRPFRSGYFGASIKLQPGYTAGVITAFYLSNNEAHPGFHDEVDIEFLGTTFGKPYTLQTNVYIKGSGDGRIIGREMKFHLWFDPTKDFHHYAILWSPKEIIFLVDDVPIRRYPRKSAATFPLRPMWLYGSIWDASSWATEDGKYKADYRYQPFVAKYTNFKASGCSAFAPRWCHPVSASPYRSGGLTSQQYRAMKWVQRYHMVYNYCQDPKRDHRLTPECWG* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03360 294 PIRSF EndGlu_transf 3 294 IPR016455 GO:0010411|GO:0016762|GO:0042546
Rops8g03360 294 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 35 292 IPR044791 GO:0004553
Rops8g03360 294 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 254 292 IPR010713 GO:0005618|GO:0016762|GO:0044042|GO:0048046
Rops8g03360 294 SUPERFAMILY Concanavalin A-like lectins/glucanases 60 280 IPR013320 -
Rops8g03360 294 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 17 229 IPR000757 GO:0004553|GO:0005975
Rops8g03360 294 FunFam Xyloglucan endotransglucosylase/hydrolase 25 293 - -
Rops8g03360 294 Gene3D - 18 292 - -
Rops8g03360 294 Pfam Glycosyl hydrolases family 16 40 221 IPR000757 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03360 Rops-Chr8 72427677 72429638 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03360 1 292 Glycoside Hydrolase AT3G44990 66.212 1.62e-145 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03360 K08235 - gmx:100796698 588.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03360 8 72427677 72429638 Rops8g03360 8 72427677 72429638 ECH