Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03311 ATGGCTGGCACACACCTCCTTTCTCACTCTCTTTCCTTTCCCAAAACCTTAAATCACTCCTTAAACCAAAACCCTTTATCCCAAAACCTAGTTATACCCTTCAAACTCAAAGCTACCATCAAAACTCGTGTTCTCAGAGCTGTTCTATCACAGAACACTCCCAAAACCCCACTAGAAGACTCCAAGAGGACTCATTTTAAACACTGTTTCACCAAATCCGAAGATGGGTATCTGTATTGTGAAGGACTTAAGGTGCATGACATTATGGAAGCTGTTGAGAAAAGACCTTTCTATTTGTACAGCAAGACTCAGATTACTAGAAATTTTGAAGCTTATAGAGATGCATTGGAAGGCTTGACTTATATAATTGGTTATGCCATCAAGGCCAACAATAACTTGAAGATTCTGGAACATTTGAGAAAGTTGGGATCTGGTGCTGTGCTTGTCAGTGGGAATGAGCTTAAACTAGCTCTTCGTGCTGGTTTTGATCCGACAAGGTGCATCTTTAATGGAAATGGGAAAATCTTGGAGGATTTGGTCTTGGCTGCCCAAGAAGGTGTGTTCGTCAACATTGATAGTGAATTTGACTTGGAAAACATTGTGGCGGCTGCAAGAATTGCTGGAAAGAGGGTGAATGTTTTACTTAGGATTAATCCTGATGTAGATCCACAGGTCCATCCTTATGTTGCCACTGGGAATAAGAACTCCAAATTTGGCATTAGAAATGAGAAGCTGCAGTGGTTTTTAGATGTTGTGAAGGAGCACCCTAATGAGCTAAAGCTCGTCGGGGCTCACTGTCATCTTGGGTCAACCATTACCAAGGTAGACATTTTCAGAGATGCAGCCACTATTATGGTCAATTACATTGACCAAATCCGAGCTCAGGGTTTTGAAGTTAATTATTTAAATATTGGTGGTGGACTTGGGATAGATTATTATCATTCTGGTGCTGTCCTTCCTACACCCAGAGATCTAATTGATACTGTACGGGAGCTTGTTCTTTCCCGTGGTCTTAATCTCATTATTGAACCAGGGAGATCACTCATAGCAAACACCTGTTGCTTGGTTAACCGGGTGACAGGTGTCAAAACTAACGGATCTAAAAACTTCATTGTAATTGATGGAAGTATGGCTGAACTTATCCGCCCCAGTCTTTATGATGCTTACCAGCATATAGAGCTGGTTTCCCCTGCCCCACCAAATGCTGAGGTAGCAACTTTTGATGTAGTCGGCCCTGTCTGTGAGTCTGCAGATTTCTTAGGGAAAGAAAGAGAACTTCCAACTCCGGCCAAGGGTACTGGTCTGGTTGTTCATGATGCTGGTGCTTATTGCATGAGCATGGCATCAACCTACAATCTAAAGATGCGGCCTCCTGAGTATTGGGTTGAAGATGATGGATCAGTGAGCAAAATCAGACATGGAGAGACATTTGAAGACCACATTCGGTTCTTTGAGGGACTTTGA 1464 0.4255 MAGTHLLSHSLSFPKTLNHSLNQNPLSQNLVIPFKLKATIKTRVLRAVLSQNTPKTPLEDSKRTHFKHCFTKSEDGYLYCEGLKVHDIMEAVEKRPFYLYSKTQITRNFEAYRDALEGLTYIIGYAIKANNNLKILEHLRKLGSGAVLVSGNELKLALRAGFDPTRCIFNGNGKILEDLVLAAQEGVFVNIDSEFDLENIVAAARIAGKRVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDVVKEHPNELKLVGAHCHLGSTITKVDIFRDAATIMVNYIDQIRAQGFEVNYLNIGGGLGIDYYHSGAVLPTPRDLIDTVRELVLSRGLNLIIEPGRSLIANTCCLVNRVTGVKTNGSKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPPNAEVATFDVVGPVCESADFLGKERELPTPAKGTGLVVHDAGAYCMSMASTYNLKMRPPEYWVEDDGSVSKIRHGETFEDHIRFFEGL* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03311 487 PRINTS Diaminopimelate decarboxylase signature 143 160 IPR002986 GO:0008836|GO:0009089
Rops8g03311 487 PRINTS Diaminopimelate decarboxylase signature 231 240 IPR002986 GO:0008836|GO:0009089
Rops8g03311 487 PRINTS Diaminopimelate decarboxylase signature 451 473 IPR002986 GO:0008836|GO:0009089
Rops8g03311 487 PRINTS Diaminopimelate decarboxylase signature 368 386 IPR002986 GO:0008836|GO:0009089
Rops8g03311 487 Pfam Pyridoxal-dependent decarboxylase, pyridoxal binding domain 104 350 IPR022644 GO:0003824
Rops8g03311 487 CDD PLPDE_III_DapDC 96 462 IPR002986 GO:0008836|GO:0009089
Rops8g03311 487 Gene3D Alanine racemase 102 347 IPR029066 -
Rops8g03311 487 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 340 359 IPR000183 GO:0003824
Rops8g03311 487 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 441 454 IPR000183 GO:0003824
Rops8g03311 487 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 125 143 IPR000183 GO:0003824
Rops8g03311 487 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 258 271 IPR000183 GO:0003824
Rops8g03311 487 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 145 157 IPR000183 GO:0003824
Rops8g03311 487 PANTHER DIAMINOPIMELATE DECARBOXYLASE 66 484 - -
Rops8g03311 487 NCBIfam diaminopimelate decarboxylase 72 481 IPR002986 GO:0008836|GO:0009089
Rops8g03311 487 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 signature 2. 294 309 IPR022657 -
Rops8g03311 487 Pfam Pyridoxal-dependent decarboxylase, C-terminal sheet domain 351 441 IPR022643 GO:0003824
Rops8g03311 487 SUPERFAMILY Alanine racemase C-terminal domain-like 325 482 IPR009006 GO:0003824
Rops8g03311 487 Gene3D Lyase, Ornithine Decarboxylase; Chain A, domain 1 84 481 IPR009006 GO:0003824
Rops8g03311 487 FunFam Diaminopimelate decarboxylase 331 481 - -
Rops8g03311 487 FunFam Diaminopimelate decarboxylase 102 347 - -
Rops8g03311 487 SUPERFAMILY PLP-binding barrel 95 351 IPR029066 -
Rops8g03311 487 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 125 143 IPR022653 -
Rops8g03311 487 Hamap Diaminopimelate decarboxylase [lysA]. 82 485 IPR002986 GO:0008836|GO:0009089
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03311 Rops-Chr8 71756982 71762160 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03311 K01586 - gmx:100786832 886.715