Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03297 ATGATGAACAACGCGAACGGGATGATGTCACCGTCGTCTTCATCGGGAACCGCACAAACACCTGGATTGAAGACCTATTTCAAAACCCCTGAAGGACGATATAAGCTTCAATACGAGAAGACTCACCCTTCTGGTCTTCTCCATTACGTTCATGGCAAAACTGTTACTCAGGTAACTTTGGCACATCTCAAGGACAAGCCAGCGCCTTCAACCCCAACTGCCTCGTCTTCAAGTTTCAGTGCCAGCAGTGGGGTACGGTCGGCGGCGGCTCGATTGTTGGGAGGAAGCAATGGAAGCCGAGCACTTAGTTTTGTTGGAGGCAATGGTAGCAGCAAGAGCAATGGAGGAAACAGTAGGATTGGTTCACTTGGTGCGTCAAGTTCGAGTAATTCAATGGCTAATCCAAATTTTGATGGGAAAGGAACTTACTTGATCTTCAATGTTGGGGATGCAATTTTCATAAGTGATTTGAATTCTCAAGACAAGGACCCCATCAAGTCTATTCACTTCAGTAATTCGAATCCGGTGTGCCATGCATTTGATCAGGATGCCAAGGATGGACATGATTTGCTCATTGGCTTGAACTCTGGTGATGTCTACTCAGTGTCACTGAGACAGCAATTACAGGATGTCGGTAAAAAGCTTGTTGGGGCCCAGCATTACAATAAAGATGGTTCTATCAATAACAGTCGTTGTACCTGTATTTCTTGGGTGCCTGGGGGTGATGGTGCTTTTGTTGTTGCTCATGCTGATGGTAATCTATACGTATATGAAAAGAACAAAGATGGTGCTGGTGAATCTTCATTCCCAGTTATCAAAGATCTAACTCAGTTTTCTGTTTCACATGCACGTTACAGTAAGAGTAATCCAATAGCCAGATGGCATATATGCCAGGGTTCGATTAACAGTTTTTCTTTCTCAAACGATGGGGCATACTTAGCAACTGTTGGAAGAGATGGGTACTTGCGAGTGTTTGATTACACAAAAGAACAACTTATATGCGGTGGAAAAAGTTATTATGGTGCTTTGTTGTGTTGTGCTTGGAGCATGGATGGAAAATATATTTTGACGGGAGGAGAAGACGATTTAGTTCAAGTTTGGAGTATGGAAGATCGTAAAGTTGTTGCATGGGGTGAGGGACATAACTCGTGGGTCAGTGGAGTGGCTTTTGATTCATATTGGTCATCGCCAAATTCAAACGACAATGGAGAGACTGTTATGTATCGGTTTGGTTCTGTTGGACAGGATACACAATTGCTTCTATGGGACCTGGAAATGGATGAGATTGTAGTGCCCCTGAGGCGATGTCCACCTGGTGGATCCCCGACTTACAGTACTGGAAGCCAGTCATCCCACTGGGACAGTGTTGTCCCATTGGGTACCTTGCAACCTGCTCCAAGTATTCGGGATGTTCCAAAAATTTCTCCGCTGGTTGCTCACCGTGTGCATACCGAACCACTCTCTGGCTTGATATTTACCCAGGAATCTGTACTTACTGCCTGCCGTGAGGGGCACATAAAAATCTGGATGAGGCCTGCGGTTGCCGAGAGCCAATCAAGCAACGCTGAAACCTTGTTAGCTACTAGTCTCAAGGAGAAGCCTTCACTTTCAAGCAAGATCAGCAATTCTAGCTACAAACAATGA 1644 0.4513 MMNNANGMMSPSSSSGTAQTPGLKTYFKTPEGRYKLQYEKTHPSGLLHYVHGKTVTQVTLAHLKDKPAPSTPTASSSSFSASSGVRSAAARLLGGSNGSRALSFVGGNGSSKSNGGNSRIGSLGASSSSNSMANPNFDGKGTYLIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAQHYNKDGSINNSRCTCISWVPGGDGAFVVAHADGNLYVYEKNKDGAGESSFPVIKDLTQFSVSHARYSKSNPIARWHICQGSINSFSFSNDGAYLATVGRDGYLRVFDYTKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSSPNSNDNGETVMYRFGSVGQDTQLLLWDLEMDEIVVPLRRCPPGGSPTYSTGSQSSHWDSVVPLGTLQPAPSIRDVPKISPLVAHRVHTEPLSGLIFTQESVLTACREGHIKIWMRPAVAESQSSNAETLLATSLKEKPSLSSKISNSSYKQ* 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03297 547 Pfam WD domain, G-beta repeat 298 326 IPR001680 GO:0005515
Rops8g03297 547 Pfam WD domain, G-beta repeat 343 368 IPR001680 GO:0005515
Rops8g03297 547 MobiDBLite consensus disorder prediction 1 26 - -
Rops8g03297 547 SUPERFAMILY WD40 repeat-like 150 509 IPR036322 GO:0005515
Rops8g03297 547 SMART WD40_4 371 423 IPR001680 GO:0005515
Rops8g03297 547 SMART WD40_4 329 368 IPR001680 GO:0005515
Rops8g03297 547 SMART WD40_4 287 326 IPR001680 GO:0005515
Rops8g03297 547 SMART WD40_4 473 510 IPR001680 GO:0005515
Rops8g03297 547 SMART WD40_4 220 258 IPR001680 GO:0005515
Rops8g03297 547 PANTHER WD REPEAT PROTEIN 12 523 - -
Rops8g03297 547 Gene3D - 12 519 IPR015943 GO:0005515
Rops8g03297 547 MobiDBLite consensus disorder prediction 106 131 - -
Rops8g03297 547 ProSiteProfiles Trp-Asp (WD) repeats profile. 336 377 IPR001680 GO:0005515
Rops8g03297 547 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03297 Rops-Chr8 71541122 71546810 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03297 303 430 Miscellaneous Gene Families AT5G08390 22.656 1.19e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03297 K24741 - gmx:100782580 962.985
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03297 8 71541122 71546810 Rops8g03297 8 71541122 71546810 ECH