Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03262 ATGGTTCACATTCAATCCTGCCTTTTGTTGGAAGATAATGTTCCAAGGGACAACATCGCTCCTTCCAAACCATATGAAAATATCCCGATCCAAAACCCATACAAACCCCCCTATCCACGTTTCAACGAAACTAATGGTTGGCTAAGAATGAAAGATTTCGTGATCCTTGGTTCCTCCATTGTCACTCCCCCTTCGCCCAACCCACACCCATCATCATCCACTCCACAACACCGCCACAGCATCAAACCCCACAACTCTTCTCTTCCAAAGCTCACTCCTTTACCTTCTTCCTCTTCCCAATGGAACATTTCTTGCACCCTTCAAGCCCCCCTCAACCTCAACCGCTATGCTCACCTAGTCTCCAAGCTTGCTCAAGAACTTGAAATGGTTCTACAGGGCACGCTTGATTCTGGGGGGGTCAATGTTGAGCTCCTAGCCAAGGTGGTTCTTCTGGGTATCCGAGGAAGAAAGGTTCGGACCGTGATTGACACTTTGAACAAAGTGCAGGGTCTCAATATTTCTTTATCTACTCATCTTGGTGGTTCTGCCATGACCCTCATTGCAAAGGAGTGTTCCCGGATGGTCACATGTGGCCACATTGAGGAAGCTGTTGAATTGATGGAGGTTCTCACACGTTTCCAGTTATCGGTCAGAGAACTTGTTCAGCCATCTGACATAATAAAAAGATGTGTTCTTAGTCGTAACCCAATTTTAGCTGTGAGGTATGCATCTCTTCTTCCACATGCACATATATTATTCTGCAACATTATATCTGAATTTGGCAAAAGGAGGGATTTAATTTCTGCTCTGGAAGCGTATGATGCAATGAAGAAGCACCTGAATAGTCCCAATATGTACATATACCGGGCAATAATTGACGCTTGTGGTCTCTGTTGCGATTATATGAAATCTAGGTACATATATGAGGATTTGCTTAATCAGAAAATCACTCCGAATATATACGTGTTTAACAGTCTCATGAATGTGAATGCCCATGATCTCAACTACACGTTACATCTATATCAAAATATGCAGAGTCTTGGTCTGAAGCCAGATATGACATCTTATAACATCCTACTGAAAGCATGCTGTGTTGCTGGAAAAGTTGACCTGGCCCAAGACATTTATACGGAACTTAAGCATTTGGAATCAGTGGGAAGGCTGAAATTAGATGTTTTTACCTACAGCACAATTATAAAGGTCTTTGCAGATGCAAAATTGTGGCAAATGGCTCTAAAAACCAAGCATGACATGCTGTCTGCTGGTGTTTCTCTTAATACTGTTGCATGGTCATCATTAATCAATGCCTGTGCACATGCAGGGCTTGTAGAGCAGGCAATTCAGTTATTTGAAGAAATGCTTATGGCTGGCTGTGAACCTAATACACAGTGTTTCAACATCATTTTACATGCATGTGTTGAAGCTTGCCAGTATGACAGGGCTTTTCGCTTTTTCAATTCTTGGAAGGGAAATAAGATGTTAGGGTCCTCCGAAGAAGGCTACAATAGCAATTTAGAGCAGGTAGGCGTGTGTAATGCTACTACTGTTCCAGATGGCATTTCAAATTCACATATCTCCAGTTTTGCCAAGAGGTTCCCTTTCACACCAACCACAGCAACATACAATACTTTGCTGAAGGCCTGTGGTACTGATTACTACCATGCAAAAGCATTAATCAATGAGATGAAAGCAGTAGGTCTTTCCCCTAATCAAATAAGCTGGTCAATTTTGATAGATATATGTGGAGGATCAGAAAATGTGAAGGGCGCCATTGAGATTTTGAAAATCATGGGTGATGCTGGAATCAAACCTGATGTTGTTGCGTATACAACAGCCATTAAGGTTTGCGTGGAAAGTAAGAATTTTAAGCAAGCATTAACATTATACGAAGAAATGAAAAGTTATGAGATCCATCCAAATTGGGTGACATACAACACGCTTCTAAAGGCACGCAGTAAATACGGCTCCGTACTTGAGGTGCAGCAATGCCTGGCTATATATCAGGATATGCGAAAGGCAGGGTACAAACCCAATGACTACTATCTGGAAGAACTGATTGAGGAGTGGTGTGAAGGAGTGATACAGAATAGCAGAGAGAACCAAGGAGAATTTTCTTCCAGCAACAAATCTGAATTTGAGAGACCTCAGAGTTTACTTCTTGAAAAAATTGCGGCGCACCTGCTGAAGAGGGTAGCTGACATCCTAGCAATTGATGTTCAAGGGCTCACAAAGGTTGAAGCTCGCCTGGTTATTCTTGCAGTTCTCCGAATGGTCAAAGAGAATTATGGCTTTGGACAATCTGTGAATGATGACATCTTGATCATCATAGGAGCTACCAAAGCAGATGAAAATCCAGCCAGACACATATTAGAAGTACAAGAGGCAATAATGAAACTTCTTAGGAATGAATTGGGGCTTGAAGTTCTTCCAGCCAGAACCAGGTTAGCACTAAGTGACCCAGCAAAGTTAGAGAACCCCAACCTTTCAAATCTCAACATAGAAGCACTACCACCAGGAGAGAATGCATTAGCCACAACAGTGGGGTTTCAAACAAGAAGACCTGCAGTTCTACAAAGGTTGAAGGTCACAAAAAAATCATTATACCGGTGGTTGCGGAGATCATTAGCAAGGTTAACTCAAGCAATTCAAAAGCACTCTGGTTTTGGAATTTGTTAA 2676 0.4215 MVHIQSCLLLEDNVPRDNIAPSKPYENIPIQNPYKPPYPRFNETNGWLRMKDFVILGSSIVTPPSPNPHPSSSTPQHRHSIKPHNSSLPKLTPLPSSSSQWNISCTLQAPLNLNRYAHLVSKLAQELEMVLQGTLDSGGVNVELLAKVVLLGIRGRKVRTVIDTLNKVQGLNISLSTHLGGSAMTLIAKECSRMVTCGHIEEAVELMEVLTRFQLSVRELVQPSDIIKRCVLSRNPILAVRYASLLPHAHILFCNIISEFGKRRDLISALEAYDAMKKHLNSPNMYIYRAIIDACGLCCDYMKSRYIYEDLLNQKITPNIYVFNSLMNVNAHDLNYTLHLYQNMQSLGLKPDMTSYNILLKACCVAGKVDLAQDIYTELKHLESVGRLKLDVFTYSTIIKVFADAKLWQMALKTKHDMLSAGVSLNTVAWSSLINACAHAGLVEQAIQLFEEMLMAGCEPNTQCFNIILHACVEACQYDRAFRFFNSWKGNKMLGSSEEGYNSNLEQVGVCNATTVPDGISNSHISSFAKRFPFTPTTATYNTLLKACGTDYYHAKALINEMKAVGLSPNQISWSILIDICGGSENVKGAIEILKIMGDAGIKPDVVAYTTAIKVCVESKNFKQALTLYEEMKSYEIHPNWVTYNTLLKARSKYGSVLEVQQCLAIYQDMRKAGYKPNDYYLEELIEEWCEGVIQNSRENQGEFSSSNKSEFERPQSLLLEKIAAHLLKRVADILAIDVQGLTKVEARLVILAVLRMVKENYGFGQSVNDDILIIIGATKADENPARHILEVQEAIMKLLRNELGLEVLPARTRLALSDPAKLENPNLSNLNIEALPPGENALATTVGFQTRRPAVLQRLKVTKKSLYRWLRRSLARLTQAIQKHSGFGIC* 892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03262 891 Gene3D Tetratricopeptide repeat domain 250 382 IPR011990 GO:0005515
Rops8g03262 891 Gene3D Tetratricopeptide repeat domain 383 515 IPR011990 GO:0005515
Rops8g03262 891 Gene3D Tetratricopeptide repeat domain 525 719 IPR011990 GO:0005515
Rops8g03262 891 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 352 382 IPR002885 -
Rops8g03262 891 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 605 639 IPR002885 -
Rops8g03262 891 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 640 677 IPR002885 -
Rops8g03262 891 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 391 425 IPR002885 -
Rops8g03262 891 Pfam Pentatricopeptide repeat domain 340 403 IPR002885 -
Rops8g03262 891 Pfam Pentatricopeptide repeat domain 539 583 IPR002885 -
Rops8g03262 891 MobiDBLite consensus disorder prediction 72 96 - -
Rops8g03262 891 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 426 460 IPR002885 -
Rops8g03262 891 MobiDBLite consensus disorder prediction 61 96 - -
Rops8g03262 891 PANTHER OS03G0856100 PROTEIN 172 492 - -
Rops8g03262 891 Pfam PPR repeat family 426 472 IPR002885 -
Rops8g03262 891 Pfam PPR repeat family 604 650 IPR002885 -
Rops8g03262 891 NCBIfam pentatricopeptide repeat 428 462 IPR002885 -
Rops8g03262 891 NCBIfam pentatricopeptide repeat 572 606 IPR002885 -
Rops8g03262 891 NCBIfam pentatricopeptide repeat 607 641 IPR002885 -
Rops8g03262 891 NCBIfam pentatricopeptide repeat 393 426 IPR002885 -
Rops8g03262 891 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 570 604 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03262 Rops-Chr8 71131741 71138977 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03262 303 699 Glycosyltransferase AT1G05670 21.182 3.61e-17 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03262 - - gmx:100794606 1321.99