Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03243 ATGCCTCGCTATGATGATAAGTATGGTAACACCCGCCTCTATGTGGGTCGCTTGTCTTCAAGGACTCGTTCCCGTGATCTGGAGCGAGCCTTCGGCAGATATGGAAGAGTTCGAGGTGTGGATATGAAGCATGATTACGCCTTTGTTGAATTTAGCGATCCTCGAGATGCTGATGATGCAAGATATAATTTGGATGGACGTGATGTTGATGGAAGTCGTATTGTTGTGGAATTTGCGAAAGGGGTTCCTCGTGGTTCCCGGGAATATTTGGGTCGAGGTCCACCTCCTGGATCTGGGCGTTGCTTTAACTGTGGCATTGATGGTCACTGGGCTCGAGATTGCAAAGCTGGAGATTGGAAAAACAAGTGTTACCGCTGTGGGGAGAGAGGTCATATAGAAAAAAACTGTAAGAACAGTCCCAAAAAGTTGAGCGGCAGACATGCAAGGAGTGTTTCACGTTCACCGGGCAGGTCACGTTCTCCTAGGCGTGGCAGAAGCAGGGATCGAAGTTACAGCAGAGACCGCAGCTACAGCCGATCAAGATCCCCTGTCAGGAGAGATCGAAGCCCAGTTCCAGATGATAGATCACGGAGTCCTGAGCCCTACAAGACAAGGAAGCATAGTCCATCTCCTGGACAAGACAGCCCACAGAAAAGAAGTACATCTCCTGGTAATGATAGGATGGCCACGACCCAAGATGGGTCTGACTACAGTGATGATCCTCGCCGGACCAGTAGAAGCCCTGCTGCAAGGGAGGACCGCGATGATAGCCCTAAAGCTAATGGGCGCAGCCGAAGCCCTAGCCATAGTCCTAGGGATGAGGATAGGAGCCCCATTGATGATGATGATGACAACCACCGCGGCTCGCAGTCACCTTAG 879 0.5119 MPRYDDKYGNTRLYVGRLSSRTRSRDLERAFGRYGRVRGVDMKHDYAFVEFSDPRDADDARYNLDGRDVDGSRIVVEFAKGVPRGSREYLGRGPPPGSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIEKNCKNSPKKLSGRHARSVSRSPGRSRSPRRGRSRDRSYSRDRSYSRSRSPVRRDRSPVPDDRSRSPEPYKTRKHSPSPGQDSPQKRSTSPGNDRMATTQDGSDYSDDPRRTSRSPAAREDRDDSPKANGRSRSPSHSPRDEDRSPIDDDDDNHRGSQSP* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03243 292 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 11 197 - -
Rops8g03243 292 SUPERFAMILY RNA-binding domain, RBD 7 100 IPR035979 GO:0003676
Rops8g03243 292 MobiDBLite consensus disorder prediction 141 164 - -
Rops8g03243 292 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 13 74 IPR000504 GO:0003723
Rops8g03243 292 SUPERFAMILY Retrovirus zinc finger-like domains 91 139 IPR036875 GO:0003676|GO:0008270
Rops8g03243 292 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 11 81 IPR000504 GO:0003723
Rops8g03243 292 Pfam Zinc knuckle 100 115 IPR001878 GO:0003676|GO:0008270
Rops8g03243 292 Pfam Zinc knuckle 121 138 IPR001878 GO:0003676|GO:0008270
Rops8g03243 292 FunFam serine/arginine-rich splicing factor RS2Z32-like isoform X1 91 119 - -
Rops8g03243 292 MobiDBLite consensus disorder prediction 134 292 - -
Rops8g03243 292 Gene3D - 120 167 - -
Rops8g03243 292 Gene3D - 91 119 - -
Rops8g03243 292 SMART rrm1_1 12 77 IPR000504 GO:0003723
Rops8g03243 292 MobiDBLite consensus disorder prediction 165 204 - -
Rops8g03243 292 SMART c2hcfinal6 122 138 IPR001878 GO:0003676|GO:0008270
Rops8g03243 292 SMART c2hcfinal6 100 116 IPR001878 GO:0003676|GO:0008270
Rops8g03243 292 ProSiteProfiles Zinc finger CCHC-type profile. 100 115 IPR001878 GO:0003676|GO:0008270
Rops8g03243 292 MobiDBLite consensus disorder prediction 236 292 - -
Rops8g03243 292 ProSiteProfiles Zinc finger CCHC-type profile. 122 138 IPR001878 GO:0003676|GO:0008270
Rops8g03243 292 Gene3D - 3 89 IPR012677 -
Rops8g03243 292 MobiDBLite consensus disorder prediction 208 235 - -
Rops8g03243 292 FunFam Serine/arginine-rich splicing factor RS2Z32 3 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03243 Rops-Chr8 70970383 70973823 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03243 K12896 - gmx:100813237 416.001