Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03234 ATGGAAATCGGTCACGGCCCTCACTCAGAGCCATCCACCCCAAGGCCCACCCTTTTCCTCTCCACTTCCGGCAAGGCTCTCCTCGTTTCCAACTCCAACAAATCTCTAGTCCTCTCCAATTCCGGCAAGCGCTTCGATTCCAAGAAGAAGTATGTCAAACAGGTCACCGGTCGTCACAACGACACCGAACTCCACCTCGCCGCCCAGCGCGGCGATGCCACCTCCGTCAGGCAAATCCTCGCCGAGATCGACGCTCAAATGATGGGAACCCTCAGCGGCGCCGAGTTCGACGCCGAGGTTGCAGATATAAGGTCCGCCATCGTCAACGAGGTCAACGAGTTAGGAGAAACCGCTCTTTTCACCGCCGCTGAAAAAGGTCACATTGACGTCGTTAAGGAGCTTCTCCCTTACACCACCAAGGAAGCCCTTACCCTAAAAAACGGCTCTGGTTTCGATCCCTTGCACATTGCAGCTAATCAAGGTCATCAAGCCATTGTGCAGGTGCTACTAGATCATGATCAAGAGTTGATAAAGACATTTGGGCAGTCAAATGCATCTCCTCTTATCTCTGCGGCGACACGAGGGCATGTGGATGTTGTTGAAGAGTTGTTATCACGCGATCCTAGTCAGTTGGAGTTATCTAGATCCAATGGAAAGAATGCACTTCATTTAGCTGCACGACAAGGGCATGTTGATGTTGTGAAGATATTGCTTCGGAAGGACCCACAGCTTGCTCGAAGGACTGATAAGAAAGGACAGACTGCACTGCATATGGCTGTCAAAGGGGTTAGCTGTGAAGTGGTGAAGCTTTTGCTTGCTGCAGATGGTGCCGTTGTCATGCTTCCTGATAGGTTTGGCAATACTGCATTGCATGTAGCCACCAGGAAGAAGAGGGCAGAGATAGTGAATGAGCTGTTACTTCTTCCTGACACCAATGTAAATGCTCTGACAAGAGACCACAAAACACCTCTTGACCTTGCGGAAGGGCTTCCAATATCTGAAGAAATTTTGGAGATCAAAGAGTGTCTGATTCGTGATGGTGCAGTTAAAGCCAATGATCTTAACCAGCCAAGGGATGAGTTAAGGAAAACCATGACACAGATCAAGAAAGATGTTTATTTTCAGCTTGAACAAACTCGAAAGACAAACAGGAATGTGAGTGGTATTGCCAAGGAGCTACGCAAGTTGCACAGAGCTGGAATCAACAACGCTACCAACTCAGTAACGGTGGTTGCTGTGCTATTTGCAGCGGTTGCATTTGCAGCACTTTTCACTGTTCCTGGTGGAGATGTTAATACTGGGATGGCTGTTATGGCACACACTGTATCTTTCAAGATCTTCTTCCTATCTAATGCTCTTGCACTCTTCACTTCATTATCTGTGGTTGTGGTTCAAATCACACTTGTTAGAGGGGAGACAAAGTCTGAGAGGAAAGTTGTGGAAGTGATCAATAAGATGATGTGGTTAGCCTCAGTTTGCACCTCAGTTTCATTCATTGCTGCATCTTATATAATAATTGGTAGGCACAATGAGTGGGCTGCAATCCTTGTTACTATTGTAGGGGGGATTGTAATGGGTGGTGTTCTTGGTACCATGACATACTATGTGGTGAAATCCAAACGTTCGAGAAAAGAGAGGAAGAAAGAGAAGATCTTAAGGACTAGAACACATTCATGGCGTCTTTCGGATTCTGATTCAGAAGAAGTACATCCAATTTATGCCATTTGA 1728 0.4682 MEIGHGPHSEPSTPRPTLFLSTSGKALLVSNSNKSLVLSNSGKRFDSKKKYVKQVTGRHNDTELHLAAQRGDATSVRQILAEIDAQMMGTLSGAEFDAEVADIRSAIVNEVNELGETALFTAAEKGHIDVVKELLPYTTKEALTLKNGSGFDPLHIAANQGHQAIVQVLLDHDQELIKTFGQSNASPLISAATRGHVDVVEELLSRDPSQLELSRSNGKNALHLAARQGHVDVVKILLRKDPQLARRTDKKGQTALHMAVKGVSCEVVKLLLAADGAVVMLPDRFGNTALHVATRKKRAEIVNELLLLPDTNVNALTRDHKTPLDLAEGLPISEEILEIKECLIRDGAVKANDLNQPRDELRKTMTQIKKDVYFQLEQTRKTNRNVSGIAKELRKLHRAGINNATNSVTVVAVLFAAVAFAALFTVPGGDVNTGMAVMAHTVSFKIFFLSNALALFTSLSVVVVQITLVRGETKSERKVVEVINKMMWLASVCTSVSFIAASYIIIGRHNEWAAILVTIVGGIVMGGVLGTMTYYVVKSKRSRKERKKEKILRTRTHSWRLSDSDSEEVHPIYAI* 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03234 575 ProSiteProfiles Ankyrin repeat profile. 285 318 IPR002110 GO:0005515
Rops8g03234 575 ProSiteProfiles Ankyrin repeat region circular profile. 149 176 - -
Rops8g03234 575 ProSiteProfiles Ankyrin repeat profile. 217 249 IPR002110 GO:0005515
Rops8g03234 575 Gene3D - 27 176 IPR036770 -
Rops8g03234 575 SUPERFAMILY Ankyrin repeat 61 329 IPR036770 -
Rops8g03234 575 Gene3D - 291 344 IPR036770 -
Rops8g03234 575 Pfam Domain of unknown function 401 504 IPR026961 -
Rops8g03234 575 FunFam Ankyrin repeat-containing protein ITN1 210 330 - -
Rops8g03234 575 ProSiteProfiles Ankyrin repeat profile. 149 176 IPR002110 GO:0005515
Rops8g03234 575 Gene3D - 178 290 IPR036770 -
Rops8g03234 575 Pfam Ankyrin repeat 286 317 IPR002110 GO:0005515
Rops8g03234 575 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 33 560 - -
Rops8g03234 575 ProSiteProfiles Ankyrin repeat region circular profile. 217 240 - -
Rops8g03234 575 Pfam Ankyrin repeats (3 copies) 64 173 IPR002110 GO:0005515
Rops8g03234 575 Pfam Ankyrin repeats (3 copies) 188 277 IPR002110 GO:0005515
Rops8g03234 575 ProSiteProfiles Ankyrin repeat profile. 251 272 IPR002110 GO:0005515
Rops8g03234 575 FunFam Ankyrin repeat-containing protein ITN1 35 175 - -
Rops8g03234 575 ProSiteProfiles Ankyrin repeat region circular profile. 251 272 - -
Rops8g03234 575 SMART ANK_2a 285 315 IPR002110 GO:0005515
Rops8g03234 575 SMART ANK_2a 59 88 IPR002110 GO:0005515
Rops8g03234 575 SMART ANK_2a 149 178 IPR002110 GO:0005515
Rops8g03234 575 SMART ANK_2a 114 145 IPR002110 GO:0005515
Rops8g03234 575 SMART ANK_2a 183 212 IPR002110 GO:0005515
Rops8g03234 575 SMART ANK_2a 251 280 IPR002110 GO:0005515
Rops8g03234 575 SMART ANK_2a 217 246 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03234 Rops-Chr8 70805155 70807929 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03234 9 575 Miscellaneous Gene Families AT3G09550 74.346 0.0 839
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03234 - - gmx:100801840 845.114