Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03170 ATGACGGGATTTCCTCGCCCTCGTGATCAGACCTCATCTTCTTCTAATTCCAGCGTCAGTGGTAGCAATGTCTTTAATTTGCTTGCACTGAGAGAGATTTCACCCAGAACAAAATACGTAGCAAAATGGCATTGGGGAGAAGCTTCTAAATCGAAATCCAGTCCTTACTCTCATCCTAAAAATGAAGTAGTGAGAGATGCAAGGCGTGGCCTCCTCTCATGGGTTGAGGCTGATTCCTTGCGGCATTTGTCAGCCAAGTATTGTCCACTATTGCCTCCCCCGCGGTCTACTATTGCAGCAGCATTTAGTCCAGATGGAAAAGTTCTTGCATCCACGCATGGTGACCACACAGTAAAGATAATTGATTGCGAAAGTGGAAATTGCTTGAAGGTGTTAGTTGGCCATAGGAGGACGCCTTGGGTGGTTAGGTTCCATCCATTGCATCCACAAATACTTGCTAGTGGGAGCTTGGATCAAGAAGTCCGATTATGGGATGCTAACACATCAGAGTGCATAATATCTCATCATTTCTATCGGCCCATTGCATCCATTGCTTTTCATGCCAAAGGGGAAATAATTGCTGTTGCATCAGGCCACAAGCTGTACATATGGCACTACAACAAGAAAGGCGAGGCGTCCTCACCAATATTTGTGTTGAAGACAAGGCGTTCTCTTCGGGCTGTGCATTTTCACCCGCATGCTGCACCATATCTTTTAACTGCTGAGGTCAATGATCTCGACTCTTCAGATTCCTCAATGACAGAGGCAACATCTCTTGGTTATTTACAATATCCTCCACCTGCTGTTTTTGTCACAAATGTTCATCCTAAGGAACATATTAGTTTGTCCAGTGAATCACCTTATGTATCATTACCTTTCTTCTTCTTGCCTTCATATACTGTTGATGATTCAAGATCAGAACAGCATGCTAGTCATGATGTTGGCTCCAGTAGCATGCAAATTGAATCTTCTCCCATGGTGCAGTTTCAAGCAGACACAAATGCAACAGAACAACAAGATACCACAGTCGCTCCCATGGATATATACTCTGAGATGCCTACTACCTCTCAAACTGGTACAGAATATCCTGCTCAAAATACTTTCTCTAGTGGAATGGGAATTGGCATTAATAACCTCACAATGGATGGCATGGAGACTGATGAAGGAAGCCAACATGGAAACCCTATTAATGCCTATTCTCTTAATGGTGCACTACATGGACTATCTAGACAAACTGCAAATCGTGGGGTTCTTTCAGAGTTTGGTCAGTTTCATCAGTTCTTTTCATCAAGAGACCCAAGTGGATGGGAGTTACCTTTTCTTCAAGGATGGTTAATGGGTCAAAGCCAAGTTGGTGTCCCCTCGATGCTTCCTCCCATGGGTGCTAGTCGTGACATTCTGGCTCCACAGATTGGTTCTTCTGTAATGGCATCTAATTTTTCTGCTTCTAATGTTGATGTAATGTCATCTTCAGCAATGTCTGGCAGCATCAGCATACCTGGATCTACTATGAGATCAGGTTCACGGAATCATTTTTCACAACCCCGTATACCTGTATCTGAATCTGGCAATCTTGCTACTTCTGTTAATACCTCGCATGATGGGTCTGATATCCAAACCATCATGAGTCGAATCCAGTCAGAACTCGCCACATCAGTGGCTGCGGCGGCAGCTGCTGAGTTGCCTTGCACTGTGAAGTTAAGAGTCTGGTCACATGACATAAAAAATCCCTGTGCCCCTCTAAATGCTGACAGATGCCGTCTAACCATACCACATGCTGTCCTCTGCAGTGAAATGGGTGCCCATTTTTCACCATGTGGTAGATTTTTAGCTGCCTGCGTTGCATGTATGCTTCCTCATATAGAAGCTGATCCAGGTTTACAAGCTCCAGTACACCAAGAGGCTGGTGTTGCCACATCACCAACTCGGCATCCAATCTCAGCACACCAAGTCATGTATGAGCTGCGGGTATATTCACTTGAGCAAGCAACATTTGGAGCAGTGCTTGCTTCACGAGCAATTAGAGCAGCTCATTGTCTGACTTCAATTCAGTTCTCGCCTACGTCTGAGCACATACTTCTTGCCTATGGTCGACGTCATGGTTCTCTTCTTAAAAGCATTGTCATTGATGGAGAAACAACATTACCTATATATACAGTGCTAGAGATATATAGAGTGTCGGATATGGAACTTGTTAGGGTGCTTCCTAGTTCCGAAGATGAGGCCAATGTGGCATGCTTTCATCCTTTTGCTGGGGGAGGGCTAGTTTATGGAACAAAGGAAGGAAAGCTTAGGATCCTTCAGTATGACGGTGCTCAAGTAGGGAATGGCACTGGACCAAGTTACTTTCCTGAGGAGACCGTCATTGGAGTCAGTCACTGA 2382 0.4475 MTGFPRPRDQTSSSSNSSVSGSNVFNLLALREISPRTKYVAKWHWGEASKSKSSPYSHPKNEVVRDARRGLLSWVEADSLRHLSAKYCPLLPPPRSTIAAAFSPDGKVLASTHGDHTVKIIDCESGNCLKVLVGHRRTPWVVRFHPLHPQILASGSLDQEVRLWDANTSECIISHHFYRPIASIAFHAKGEIIAVASGHKLYIWHYNKKGEASSPIFVLKTRRSLRAVHFHPHAAPYLLTAEVNDLDSSDSSMTEATSLGYLQYPPPAVFVTNVHPKEHISLSSESPYVSLPFFFLPSYTVDDSRSEQHASHDVGSSSMQIESSPMVQFQADTNATEQQDTTVAPMDIYSEMPTTSQTGTEYPAQNTFSSGMGIGINNLTMDGMETDEGSQHGNPINAYSLNGALHGLSRQTANRGVLSEFGQFHQFFSSRDPSGWELPFLQGWLMGQSQVGVPSMLPPMGASRDILAPQIGSSVMASNFSASNVDVMSSSAMSGSISIPGSTMRSGSRNHFSQPRIPVSESGNLATSVNTSHDGSDIQTIMSRIQSELATSVAAAAAAELPCTVKLRVWSHDIKNPCAPLNADRCRLTIPHAVLCSEMGAHFSPCGRFLAACVACMLPHIEADPGLQAPVHQEAGVATSPTRHPISAHQVMYELRVYSLEQATFGAVLASRAIRAAHCLTSIQFSPTSEHILLAYGRRHGSLLKSIVIDGETTLPIYTVLEIYRVSDMELVRVLPSSEDEANVACFHPFAGGGLVYGTKEGKLRILQYDGAQVGNGTGPSYFPEETVIGVSH* 794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03170 793 PANTHER ACTIVATING MOLECULE IN BECN1-REGULATED AUTOPHAGY PROTEIN 1 18 788 - -
Rops8g03170 793 MobiDBLite consensus disorder prediction 498 517 - -
Rops8g03170 793 Pfam WD domain, G-beta repeat 99 122 IPR001680 GO:0005515
Rops8g03170 793 Pfam WD domain, G-beta repeat 126 165 IPR001680 GO:0005515
Rops8g03170 793 MobiDBLite consensus disorder prediction 1 20 - -
Rops8g03170 793 SUPERFAMILY WD40 repeat-like 99 241 IPR036322 GO:0005515
Rops8g03170 793 Gene3D - 81 253 IPR015943 GO:0005515
Rops8g03170 793 SMART WD40_4 125 165 IPR001680 GO:0005515
Rops8g03170 793 SMART WD40_4 168 205 IPR001680 GO:0005515
Rops8g03170 793 SMART WD40_4 728 768 IPR001680 GO:0005515
Rops8g03170 793 SMART WD40_4 84 122 IPR001680 GO:0005515
Rops8g03170 793 ProSitePatterns Trp-Asp (WD) repeats signature. 152 166 IPR019775 -
Rops8g03170 793 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 132 170 - -
Rops8g03170 793 ProSiteProfiles Trp-Asp (WD) repeats profile. 132 174 IPR001680 GO:0005515
Rops8g03170 793 FunFam Activating molecule in BECN1-regulated autophagy protein 79 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03170 Rops-Chr8 69734891 69742278 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03170 61 204 Miscellaneous Gene Families AT5G08390 29.412 3.25e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03170 K17985 - gmx:100817857 1352.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03170 8 69734891 69742278 Rops8g03170 8 69734891 69742278 ECH