Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03160 ATGGAGGAGGAAGGTGAGATGTACGATGGTGTGAGAGCTCAATTCCCTCTTACCTTCGGGAAGCAATCAAAATCTCAAACCCCTCTCGAAGCCATTCACAACGCTACTCGTCGTTCCAATTCCAAAACCACCGACGATTTTCCTTCTCTCTCCTCCTCTTCCAAGGATTGGCTCAATTCCCTTCGTCCCTCCAAAAACCCTATTCCTCCACCGCCTCAACACGACGACGATGGCCCCATGGTGGGACCCCCTCCACCACCTCAACACGACGACGATGGCCCCATGGTGGGACCCCCTCCACCACAGCCCAAATTTGCCGAAGACGGTGGCGACAGCGACGGCGAGATGATTGGCCCACCCCCTCCTCCTTCCAATGTAACCGGGTCGGACTCCGATGAAGATGAGTTGGGGAACCGGTTTAGAATTCCACTTAGCAACGAGATTGTGCTTAAGGGTCATACCAAGGTTGTGTCAGCTCTTGCTGTGGATCACACTGGATCTAGGGTACTTTCTGGAAGTTATGATTATTCTGTGCGTATGTATGACTTTCAAGGAATGAATTCTCGCTTGGAATCGTTTCGACAACTGGAGCCATTTGAAGGGCATCAAGTTCGCAGTATAAGCTGGAGTCCAACTGCAGATCGATTCTTGTGTGTGACCGGATCGGCTCAAGCTAAGATTTATGATCGTGATGGGCTCACTTTGGGAGAGTTTATGAAGGGAGACATGTATATTCGTGATTTAAAGAATACCAAGGGCCATATATCGGGATTGACATGTGGAGAGTGGCATCCTAAAACTAAAGAGACCATTTTGACATCATCAGAGGATGGGTCGCTTCGCATATGGGATGTAAATGACTTCAAAAGTCAGAAACAGGTCATTAAACCAAAGCTTGCGAGACCTGGAAGAGTTCCTGTCACCACATGTGCATGGGATCGAGATGGTAAATGCATTGCTGGTGGTATAGGAGATGGTTCTATACAGATTTGGAATATTAAACCTGGATGGGGGAGTAGGCCGGATGTACATATCGAAAAATGTCACGAGGATGATATTACTGGTCTGAAATTTTCTAGTGATGGGAGAATCTTATTGTCAAGGAGCTTTGATGGTTCATTGAAGGTTTGGGATATGCGCAAAACAAAGGAAGCATTAAAGGTATTTGAGGATCTGCCAACTCACTATGGACAAACAAATATTGCCTTCAGTCCTGATGAACAACTATTTTTTACTGGAACTTCTGTTGAAAGGGAGAGCACAACAGGAGGTTTATTGTGCTTCTTTGATAGAGTAAATCTTGATCTTGTTTCAAGAGTTGGCATATCCCCCACTTGTAGTGTTGTGCAGTGTTCTTGGCATCCTAAACTGAATCAGATCTTTGCAACTGTTGGTGATAAAAGCCAAGGAGGGACTCACATACTATATGATCCAACCCTCAGTGAGAGAGGAGCTCTTGTTTGTGTTGGACGTGCGCCAAGGAAAAAATCAATTGATGACTTTGAGGCAAAACCTGTAATTCACAATCCTCATGCTTTGCCGTTATTTAGAGATCAGCCAAGCCGCAAGCGTCAGCGAGATAAAATATTAAAGGATCCATTGAAGTCCCACAAGCCTGAACTACCCATGACAGGACCAGGCTTTGGTGGGCGAGTTGGTACAACTCAAGGAAGCTTACTGACCCAGTATCTTATGAAGCAAGGGGGTATGATTAAGGAGACATGGATGGAAGAAGATCCTAGGGAAGCTATCCTAAAATATGCTGATGCTGCCGCAAAGGATCCGAAGTTCATTGCTCCAGCATATGCAGAAACCCAACCTGAGCCAGTGTTTGCAAAGTCAGATTCCGAGGAGGATGAAGAGAAATGA 1869 0.4596 MEEEGEMYDGVRAQFPLTFGKQSKSQTPLEAIHNATRRSNSKTTDDFPSLSSSSKDWLNSLRPSKNPIPPPPQHDDDGPMVGPPPPPQHDDDGPMVGPPPPQPKFAEDGGDSDGEMIGPPPPPSNVTGSDSDEDELGNRFRIPLSNEIVLKGHTKVVSALAVDHTGSRVLSGSYDYSVRMYDFQGMNSRLESFRQLEPFEGHQVRSISWSPTADRFLCVTGSAQAKIYDRDGLTLGEFMKGDMYIRDLKNTKGHISGLTCGEWHPKTKETILTSSEDGSLRIWDVNDFKSQKQVIKPKLARPGRVPVTTCAWDRDGKCIAGGIGDGSIQIWNIKPGWGSRPDVHIEKCHEDDITGLKFSSDGRILLSRSFDGSLKVWDMRKTKEALKVFEDLPTHYGQTNIAFSPDEQLFFTGTSVERESTTGGLLCFFDRVNLDLVSRVGISPTCSVVQCSWHPKLNQIFATVGDKSQGGTHILYDPTLSERGALVCVGRAPRKKSIDDFEAKPVIHNPHALPLFRDQPSRKRQRDKILKDPLKSHKPELPMTGPGFGGRVGTTQGSLLTQYLMKQGGMIKETWMEEDPREAILKYADAAAKDPKFIAPAYAETQPEPVFAKSDSEEDEEK* 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03160 622 MobiDBLite consensus disorder prediction 518 538 - -
Rops8g03160 622 ProSitePatterns Trp-Asp (WD) repeats signature. 319 333 IPR019775 -
Rops8g03160 622 ProSiteProfiles Trp-Asp (WD) repeats profile. 251 293 IPR001680 GO:0005515
Rops8g03160 622 Gene3D - 122 235 IPR015943 GO:0005515
Rops8g03160 622 ProSitePatterns Trp-Asp (WD) repeats signature. 271 285 IPR019775 -
Rops8g03160 622 SMART WD40_4 288 332 IPR001680 GO:0005515
Rops8g03160 622 SMART WD40_4 339 378 IPR001680 GO:0005515
Rops8g03160 622 SMART WD40_4 143 182 IPR001680 GO:0005515
Rops8g03160 622 SMART WD40_4 241 284 IPR001680 GO:0005515
Rops8g03160 622 SMART WD40_4 192 229 IPR001680 GO:0005515
Rops8g03160 622 MobiDBLite consensus disorder prediction 1 137 - -
Rops8g03160 622 MobiDBLite consensus disorder prediction 600 622 - -
Rops8g03160 622 Pfam WD domain, G-beta repeat 148 182 IPR001680 GO:0005515
Rops8g03160 622 Pfam WD domain, G-beta repeat 306 332 IPR001680 GO:0005515
Rops8g03160 622 Pfam WD domain, G-beta repeat 344 378 IPR001680 GO:0005515
Rops8g03160 622 Pfam WD domain, G-beta repeat 249 284 IPR001680 GO:0005515
Rops8g03160 622 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 251 286 - -
Rops8g03160 622 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 150 184 - -
Rops8g03160 622 Gene3D - 236 479 IPR015943 GO:0005515
Rops8g03160 622 ProSiteProfiles Trp-Asp (WD) repeats profile. 346 387 IPR001680 GO:0005515
Rops8g03160 622 CDD WD40 149 468 - -
Rops8g03160 622 MobiDBLite consensus disorder prediction 18 61 - -
Rops8g03160 622 MobiDBLite consensus disorder prediction 518 549 - -
Rops8g03160 622 ProSiteProfiles Trp-Asp (WD) repeats profile. 150 191 IPR001680 GO:0005515
Rops8g03160 622 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 346 380 - -
Rops8g03160 622 FunFam WD repeat-containing protein 70 239 481 - -
Rops8g03160 622 PANTHER GASTRULATION DEFECTIVE PROTEIN 1-RELATED 7 622 - -
Rops8g03160 622 PRINTS G protein beta WD-40 repeat signature 319 333 IPR020472 -
Rops8g03160 622 PRINTS G protein beta WD-40 repeat signature 271 285 IPR020472 -
Rops8g03160 622 PRINTS G protein beta WD-40 repeat signature 365 379 IPR020472 -
Rops8g03160 622 MobiDBLite consensus disorder prediction 64 105 - -
Rops8g03160 622 FunFam Nucleotide binding protein 97 238 - -
Rops8g03160 622 SUPERFAMILY WD40 repeat-like 139 466 IPR036322 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03160 253 415 Miscellaneous Gene Families AT5G08390 24.390 2.68e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03160 K24752 - gmx:100815380 1095.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03160 8 69620530 69624139 Rops8g03160 8 69620530 69624139 ECH