Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03155 ATGGATTTTGCTTCTTCTTCCTCACCTCTCTTCATTAACACATCCCATGGCCCCACTCTTCGAACTAAACAAATGGAAGAAGGAAGTAATGGGTTGAAGCCCATGGACGCTGAGCAACTGAGAGAGCAGGCTCATAAGATGGTAGACTTCATTGCAGATTACTACAAATCCATTGAAAATTTCCCAGTTCTCAGCCAAGTTCAGCCAGGTTATCTTGGGAAGCTTTTACCAGATTCTGCACCTACTTATCCTGATTCATTGCAAAATGTTTTGAATGATGTACAGGAAAAGATACTACCAGGGGTGACACATTGGCAAAGCCCAAATTATTTTGCATATTTTCCTTCCAATAGTAGCATTGCTGGATTTCTAGGAGAGATGCTCAGTGCTGGTCTTAACATCGTGGGTTTCAGCTGGATAACTTCTCCTGCTGCAACTGAACTTGAGTCAATTGTTCTAGACTGGCTTGCAAAGGCACTTGAGCTGCCTGTTGATTTCTATTCTACTGGGCAAGGTGGTGGAGTTATACAGGGAACAGCAAGTGAAGCTGAACTAGTTGTCTTGTTGGCTGCCCGTGACAAGATCTTAAGGAGGGTTGGAAGGAGTGTCCTTCCTAAGCTTGTGGCATATGCATCTGATCAAACACACTCCGCTTTCCAAAAAGCCTGCCAGATAGGAGGAATTAATCCAGAGCATTGCAGGTTGCTTAAAACTGATTCTTCCACAAATTTTGCCCTTTCTCCTGATGTACTTTCTGAAGCAATTTCAAGTGACATTGCCAGCGGTCTTATACCCTTTTTCTTATGTGCTACTGTTGGTACCACTTCATCAACAGCTGTTGATCCTCTGCCTGCATTAGCAAATATTGCTAAGACCAACAAAATTTGGTTTCATGTGGATGCTGCTTATGCTGCAAGTGCTTGTATATGTCCAGAGTACCGCCACCACATTGATGGCGTTGAAGAAGCAGACTCATTTAACATGAATGCACATAAATGGTTCCTGACAAACTTTGACTGTTCACTACTTTGGGTTAAGGACAGGAGTGCTCTGATTCAGTCACTGTCTACAAATCCTGAATTTCTGAAAAACAAGGCCTCTCTAGAAAACATGGTTATAGATTATAAAGATTGGCAAATTCCTCTTGGGCGTCGCTTTAGATCATTAAAACTATGGATGGTGTTGCGACTCTATGGATTGGAAGGTCTGCGAAGTCACATAAGAAACCATATTGCTATGGCTGCTTATTTTGTGGAGCTTGTTGGTCAGGACAAAAGATTCAAGGTCGTTGCGCCTCGCACATTCTCTTTAGTTTGTTTCCGGCTTTTGCCTCCTTCCAACTCTGAAGATCATGGCAATAAGCTAAATCGTGATCTACTTGATGCAGTAAATTCAACTGGAAGTGTTTTCATAACACACACGGTTCTATCAGGTGAATGCATTCTACGTTTTGCAGTAGGAGCACCATTGACAGAAATGAGGCATGTCAAAATGGCATGGCAGATTTTGCAAGAAAAAGCCACTGCTTTACTTGAGAGTTTGTTATAG 1548 0.4231 MDFASSSSPLFINTSHGPTLRTKQMEEGSNGLKPMDAEQLREQAHKMVDFIADYYKSIENFPVLSQVQPGYLGKLLPDSAPTYPDSLQNVLNDVQEKILPGVTHWQSPNYFAYFPSNSSIAGFLGEMLSAGLNIVGFSWITSPAATELESIVLDWLAKALELPVDFYSTGQGGGVIQGTASEAELVVLLAARDKILRRVGRSVLPKLVAYASDQTHSAFQKACQIGGINPEHCRLLKTDSSTNFALSPDVLSEAISSDIASGLIPFFLCATVGTTSSTAVDPLPALANIAKTNKIWFHVDAAYAASACICPEYRHHIDGVEEADSFNMNAHKWFLTNFDCSLLWVKDRSALIQSLSTNPEFLKNKASLENMVIDYKDWQIPLGRRFRSLKLWMVLRLYGLEGLRSHIRNHIAMAAYFVELVGQDKRFKVVAPRTFSLVCFRLLPPSNSEDHGNKLNRDLLDAVNSTGSVFITHTVLSGECILRFAVGAPLTEMRHVKMAWQILQEKATALLESLL* 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03155 515 FunFam Histidine decarboxylase 116 408 - -
Rops8g03155 515 CDD DOPA_deC_like 110 505 - -
Rops8g03155 515 Gene3D - 116 408 IPR015421 GO:0003824
Rops8g03155 515 ProSitePatterns DDC / GAD / HDC / TyrDC pyridoxal-phosphate attachment site. 325 346 IPR021115 GO:0016831
Rops8g03155 515 Pfam Pyridoxal-dependent decarboxylase conserved domain 69 442 IPR002129 GO:0016830|GO:0019752|GO:0030170
Rops8g03155 515 Gene3D Aspartate Aminotransferase, domain 1 409 514 IPR015422 GO:0003824
Rops8g03155 515 PRINTS Aromatic-L-amino-acid decarboxylase signature 128 146 IPR010977 GO:0006520|GO:0016831
Rops8g03155 515 PRINTS Aromatic-L-amino-acid decarboxylase signature 172 192 IPR010977 GO:0006520|GO:0016831
Rops8g03155 515 PRINTS Aromatic-L-amino-acid decarboxylase signature 40 59 IPR010977 GO:0006520|GO:0016831
Rops8g03155 515 PRINTS Aromatic-L-amino-acid decarboxylase signature 147 166 IPR010977 GO:0006520|GO:0016831
Rops8g03155 515 PRINTS Aromatic-L-amino-acid decarboxylase signature 81 100 IPR010977 GO:0006520|GO:0016831
Rops8g03155 515 PRINTS Aromatic-L-amino-acid decarboxylase signature 424 443 IPR010977 GO:0006520|GO:0016831
Rops8g03155 515 PRINTS Aromatic-L-amino-acid decarboxylase signature 63 80 IPR010977 GO:0006520|GO:0016831
Rops8g03155 515 PRINTS Aromatic-L-amino-acid decarboxylase signature 107 126 IPR010977 GO:0006520|GO:0016831
Rops8g03155 515 PRINTS Aromatic-L-amino-acid decarboxylase signature 381 396 IPR010977 GO:0006520|GO:0016831
Rops8g03155 515 MobiDBLite consensus disorder prediction 1 26 - -
Rops8g03155 515 MobiDBLite consensus disorder prediction 1 31 - -
Rops8g03155 515 SUPERFAMILY PLP-dependent transferases 35 508 IPR015424 -
Rops8g03155 515 PANTHER GROUP II PYRIDOXAL-5-PHOSPHATE DECARBOXYLASE 29 513 - -
Rops8g03155 515 FunFam Histidine decarboxylase 35 115 - -
Rops8g03155 515 Gene3D - 30 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03155 Rops-Chr8 69472797 69488387 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03155 K01593 - gmx:100791074 857.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03155 8 69472797 69488387 Rops8g03155 8 69472797 69488387 ECH