Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03147 ATGGCGTCTTCTTACCCTGGTTCCGTTAGTGCTGCCCAGGTTGGTTCCTACTTTGTAGGACAATACTATCAAGTTCTTCGCCAACAACCAAATCTTGTTCATCAGTTCTACTCAGATTCCAGCTCCATGATTCGCGTTGATGGTGATTCTACTGAGACTGCACCCGATGTCTTGCAAATTCATTCAATTGTGACGTCATTGAATTTCTCAACGATTGAGATCAAGACGATCAATTCTCTTGACTCTTGGGATGGTGGTGTGCTTGTGATGGTCTCGGGTTTTGTTAAGATCAAGGATATTAATAAGAGGCGGAAATTTGTTCAGACCTTCTTTCTTGCTCCTCAGGAGAAGGGTTACTTTGTGCTAAATGATATATTTCATTTTGTTGAAGATGGAGTAACGCACCCAAATTTGGTATCTGTGGCACCTGAAAAGATTGACACGCAACCAAATGTATCTGCTTCTCTTGCGGACCCACCTGCAGCTTCGCATTATGGTTTAGAGGAAGAGGCTAGGGAGTATGTCAACTCAGTTCATATAAATGATGATCCAGTGGACAAGTATAGTCTTCCTGAGCAGCAGCAGCTAGAAGAAGATCTTGAGACTGAAATTGTGGTGGAGGAAACTCCTGCACAGGAGGAATCTCCACCAATTCATAATGTTGCACATACCATCCATGAAACCCCGGTTGCTTACGTGGAAGAATCATATGAGGAGCCTCCTAAGAAAACTTATGCATCTATCTTACGAGTCTCCAAAGGGCAATCAGGGTTGTCAGCTGCTCCACAACATTCTTTTAAAAGTGCTCCTTCTCCTTCAGAGGTGAATCACGTAACACAGCCTGCTGTTCAGCAGTCAAGCTCTGCATCTGCGTATGTTCCTGATTCTGGGGCTGAGGCAGCAGAGGAAGGCTATGGACTAGAAGAAGAAGGTGAAGTAACATCTGTCTATGTGAGAAACTTGCCTGCCGATGTTACTGAAGCTGAAATTGACGAGGAATTTAAGAACTTTGGTAGAATTAAGCCGGATGGAATATTCATCAGGGTTCGAAAGGAAATTGGAGTTTGCTATGCATTTGTGGAATTCGAGGATATTATTGGTGTTCAAAATGCGCTTCAGGCTTCACCCATACAATTGGCTGGAAGACAAGTATACATAGAGGAGCGGAGACCAAACAGTGGCAGTGCAGCTCGGGGAGGAAGAAGGGGAAGAGGCAGAGGCAGTTATCAAACAGATGCTCCAAGAGGGCGTTTTGGTGCTAGGAGCTTGGGAAGGGGAAGTAACCAGGATACTTCAGACTACACCAGACTAAGAGGCGATGGTTATCTGCAGCGTGGTTCCCGATAG 1347 0.4499 MASSYPGSVSAAQVGSYFVGQYYQVLRQQPNLVHQFYSDSSSMIRVDGDSTETAPDVLQIHSIVTSLNFSTIEIKTINSLDSWDGGVLVMVSGFVKIKDINKRRKFVQTFFLAPQEKGYFVLNDIFHFVEDGVTHPNLVSVAPEKIDTQPNVSASLADPPAASHYGLEEEAREYVNSVHINDDPVDKYSLPEQQQLEEDLETEIVVEETPAQEESPPIHNVAHTIHETPVAYVEESYEEPPKKTYASILRVSKGQSGLSAAPQHSFKSAPSPSEVNHVTQPAVQQSSSASAYVPDSGAEAAEEGYGLEEEGEVTSVYVRNLPADVTEAEIDEEFKNFGRIKPDGIFIRVRKEIGVCYAFVEFEDIIGVQNALQASPIQLAGRQVYIEERRPNSGSAARGGRRGRGRGSYQTDAPRGRFGARSLGRGSNQDTSDYTRLRGDGYLQRGSR* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03147 448 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 10 439 IPR039539 -
Rops8g03147 448 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 316 379 IPR000504 GO:0003723
Rops8g03147 448 MobiDBLite consensus disorder prediction 259 293 - -
Rops8g03147 448 SUPERFAMILY RNA-binding domain, RBD 312 419 IPR035979 GO:0003676
Rops8g03147 448 Gene3D - 5 132 - -
Rops8g03147 448 Gene3D - 294 433 IPR012677 -
Rops8g03147 448 ProSiteProfiles Nuclear transport factor 2 domain profile. 14 128 IPR018222 -
Rops8g03147 448 SMART rrm1_1 315 387 IPR000504 GO:0003723
Rops8g03147 448 FunFam Nuclear transport factor 2 family protein 5 132 - -
Rops8g03147 448 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 314 391 IPR000504 GO:0003723
Rops8g03147 448 MobiDBLite consensus disorder prediction 259 309 - -
Rops8g03147 448 FunFam Nuclear transport factor 2 family protein 303 442 - -
Rops8g03147 448 CDD NTF2 10 130 IPR018222 -
Rops8g03147 448 MobiDBLite consensus disorder prediction 390 448 - -
Rops8g03147 448 CDD RRM_SF 316 387 - -
Rops8g03147 448 Pfam Nuclear transport factor 2 (NTF2) domain 14 128 IPR002075 -
Rops8g03147 448 SUPERFAMILY NTF2-like 10 129 IPR032710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03147 Rops-Chr8 69372772 69383058 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03147 - - gmx:100787900 718.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03147 8 69372772 69383058 Rops8g03147 8 69372772 69383058 ECH