Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03146 ATGGCAATATACTTCTCCAACTCCTCTGCTTATGTGAAGCCAACACTAACAAGTTTAGGAGAATTCCTTTCACAATCAGGACGAACCTCTCCCCTAATAGCTTGGCCAGTACCCTCAGAAACAACACTTGCTGTTGTAGCAGCTTCATCACCGTTTCTCTTTCTTCAGGCAAAGGTCTTTTGTTTGATCATGGGAGACAGCGAAACAACAGTTATTGCAGAAACATCTGCGGCTGAGATGTATGCTTCGGCTGGATATGCCGATGCTGTCTCGAATCCTGTTCCCCAGGAAGGTGCCGCCGTTGCTGAGTCTGGAGGAGAAGCTGCTCAGGGAAATTCAGCTTACGGATTTGGTTATTCTAATACTGATGAGGGGAATGCTTATGCTGGCGGGGATCCTAACTCCGTTCTACAACAAGCCCAATTCAGTGCAACTGATGGTTCCAAGCAAGATGTTGGGGGGACTGATGCTAATGATGCCTCTGCTGGGCTTGGAAACACAGCTACAGAGTCTACTCTAGTTTCTGACTACAATTCATCTGTAAATGGCGGTGTTGTTGGTGCAGCGGGACTTGAAAATGGAAATGCATTGGAGAATGTTGATGGGTCAGCTGATGAGAAACAGCTCGCAGATGGTTATGCTGCCCTGTCTGTTGAAGAAGATCGACTATGGAATATTGTAAGAGCTAATTCTTCAGATTTTACTGCTTGGACTGCCTTGATTGAAGAGACTGAGAAGGTGGCAGAGGACAACATTTTGAAGATTCGAAGAGTCTATGATGCTTTTCTAGCAGAATTTCCTTTGTGTTATGGTTATTGGAAGAAATATGCTGACCATGAAGCACGTCTTGGCTCTGTTGATAAAGTTGTTGAAGTGTATGAACGTGCTGTTCAAGGGGTTACATATTCGGTGGACATGTGGTTGCATTATTGCATATTTGCTATAAGCACTTATGGGGATCCAGACACAGTTCGTAGGCTTTTTGAACGAGGATTAGCTTATGTTGGAACAGATTATCTTTCTTTTCCTCTTTGGGATAAATACATTGAATATGAATACATGCAGCAAGATTGGGCCCGCCTTGCCATGATCTACACCAGAATATTAGAGAATCCAAATCAGCAATTGGATCGGTATTTCAGCAGCTTCAAGGAATTAGCTGCTAATCGACCTTTGTCAGAATTACGGACTGCTGATGAAGCTGCTACAGCAGCAAGTGTTGTTTCTGAGGGTACTGGCCAAGCTATTGAGGGAGAGGTTCGTCCTGATGGTGAAGGGAATTCTCCTAAACCTGTTAATGCTGGCTTAACAGAAGCAGAGGAGTTGGAGAAGTATATTGCCATTAGAGAAGAGATGTATAAGAAAGCTAAAGAGTTCGATTCTAAGATTATTGGTTTTGAAACAGCCATCAGGAGGCCCTACTTTCATGTACGGCCACTCAATATCGGAGAGCTTGAGAATTGGCATAACTATCTGGACTTTATAGAAAGAGAAGGCGACTTAAGCAAGATTGTCAAGTTGTATGAGAGATGTGTCATTGCATGTGCCAATTATCCTGAGTACTGGACACGCTATGTTTTGTGTATGGAAGCTAGTGGAAGCATGGATCTTGCAAATAATGTTCTTGCTCGGGCAACCCAAGTCTTTGTCAAGAGACAACCTGAGATACATCTTTTTTGTGCTCGGTTCAAGGAGCAAGCTGGAGATATAGCTGGTGCCAGAGCTGCATATCAACTTGTGCATACTGAAATTTCTCCAGGTCTTCTTGAAGCAATAATCAGGCATGCCAATATGGAATATCGACTGGGAAAGTTGGAGGATGCCTTCTCTTTGTATGAACAAGCCATTGCCATTGAGAAAGGAAAAGAACATTCACAAACATTGTCGATGTTGTTTGCTCAGTATTCTCGATTTGTTTATTTGGCTTCTGGGAATGCACAGAAGGCAAGAGAGATTCTGGTTGGGGGGCTTGAGAATGTTTTGTTGTCAAAACCACTACTCGAGGCTTTATTGCATTTTGAGGCTATTCAACCCCAGCCAAAGCAAGTTGATATTGACTTTCTGGAGTCATTGGTTGTCAAATTCATAGTGCCCAACCCAGAGAGCCCTGGTGTTGCAAGTGCAACAGAGCGTGAGGAACTTTCTAGCATTTTTCTGGAGTTTCTAAATCTCTTTGGAGATGTTCAATCAATCAAGAGGTGTGAGGATAGGCATGCTAAACTGTTCTTGCCACATAGGAGCATGTCAGAGTTGAAAAAGCGTCAGGCTGAGGATTTCTTAGCTTCAGATAAAACAAAAGCGGCAAGAACTTATTCTGCTCAATCACCTGCCCAATCTGTGATGGGTGCATATCCAAATGCACCGAACCAATGGGCTAACTATGGAGTACAACCTCAAACTTGGCCAGCGGTCACACAAGCACAAGGACAACAATGGACTGCTGGCTATACCCAGCAGGCTTCCTATGGGGCTTATGCTGGATATGGGGCCAACTATGCGAACTCGCAATTGCCTGCATCAGTTCCACAAAGTACTGCATATGGAGCCTATCCTCCTGCCTATCCTGTACAGCCGGCACTTCCTCAACAAAATTATGCACAACCTGTTGCAGCCCCTACTCAGCAACCTGCTGCGGTTCCTCAGGCCTATTACGGGAGTTACTATTGA 2667 0.4428 MAIYFSNSSAYVKPTLTSLGEFLSQSGRTSPLIAWPVPSETTLAVVAASSPFLFLQAKVFCLIMGDSETTVIAETSAAEMYASAGYADAVSNPVPQEGAAVAESGGEAAQGNSAYGFGYSNTDEGNAYAGGDPNSVLQQAQFSATDGSKQDVGGTDANDASAGLGNTATESTLVSDYNSSVNGGVVGAAGLENGNALENVDGSADEKQLADGYAALSVEEDRLWNIVRANSSDFTAWTALIEETEKVAEDNILKIRRVYDAFLAEFPLCYGYWKKYADHEARLGSVDKVVEVYERAVQGVTYSVDMWLHYCIFAISTYGDPDTVRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQDWARLAMIYTRILENPNQQLDRYFSSFKELAANRPLSELRTADEAATAASVVSEGTGQAIEGEVRPDGEGNSPKPVNAGLTEAEELEKYIAIREEMYKKAKEFDSKIIGFETAIRRPYFHVRPLNIGELENWHNYLDFIEREGDLSKIVKLYERCVIACANYPEYWTRYVLCMEASGSMDLANNVLARATQVFVKRQPEIHLFCARFKEQAGDIAGARAAYQLVHTEISPGLLEAIIRHANMEYRLGKLEDAFSLYEQAIAIEKGKEHSQTLSMLFAQYSRFVYLASGNAQKAREILVGGLENVLLSKPLLEALLHFEAIQPQPKQVDIDFLESLVVKFIVPNPESPGVASATEREELSSIFLEFLNLFGDVQSIKRCEDRHAKLFLPHRSMSELKKRQAEDFLASDKTKAARTYSAQSPAQSVMGAYPNAPNQWANYGVQPQTWPAVTQAQGQQWTAGYTQQASYGAYAGYGANYANSQLPASVPQSTAYGAYPPAYPVQPALPQQNYAQPVAAPTQQPAAVPQAYYGSYY* 889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03146 888 Gene3D Tetratricopeptide repeat domain 225 394 IPR011990 GO:0005515
Rops8g03146 888 FunFam Putative pre-mrna-processing factor 39 225 395 - -
Rops8g03146 888 MobiDBLite consensus disorder prediction 406 433 - -
Rops8g03146 888 SUPERFAMILY TPR-like 443 746 IPR011990 GO:0005515
Rops8g03146 888 MobiDBLite consensus disorder prediction 142 164 - -
Rops8g03146 888 SUPERFAMILY TPR-like 227 387 IPR011990 GO:0005515
Rops8g03146 888 PANTHER PRE-MRNA PROCESSING PROTEIN PRP39-RELATED 204 877 - -
Rops8g03146 888 FunFam Tetratricopeptide repeat (TPR)-like superfamily protein 478 770 - -
Rops8g03146 888 Gene3D Tetratricopeptide repeat domain 479 778 IPR011990 GO:0005515
Rops8g03146 888 SMART hat_new_1 250 282 IPR003107 GO:0006396
Rops8g03146 888 SMART hat_new_1 356 389 IPR003107 GO:0006396
Rops8g03146 888 SMART hat_new_1 603 638 IPR003107 GO:0006396
Rops8g03146 888 SMART hat_new_1 499 531 IPR003107 GO:0006396
Rops8g03146 888 SMART hat_new_1 284 316 IPR003107 GO:0006396
Rops8g03146 888 SMART hat_new_1 319 354 IPR003107 GO:0006396
Rops8g03146 888 SMART hat_new_1 568 601 IPR003107 GO:0006396
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03146 Rops-Chr8 69355000 69366716 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03146 K13217 - gmx:100787373 1389.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03146 8 69355000 69366716 Rops8g03146 8 69355000 69366716 ECH