Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03103 ATGGGTCGAATGGTGAGTGACAAAATGAAGGAGATACTTCAGGCTCCAACACCTGAATCGAAGATGGTTGATGATGCAACGTTGGAGACATTGGAGGAACCTAATTGGGGCATCAATATGAGGATTTGTGCCTTGATTAATAGCGAGGAGTTTAATGGGTCTGAGGTAGTTAAGGCCATTAAGAGGAAGATCAATCATAAGAGTCCTGTTGTTCAGAGGTTAAGCCTTGATTTGTTGGAAGCTTGTGCGATGAATTGTGATAAGGTGTTTTCTGAAGTGGCTTCTGAGAAGGTGCTTGATGATATGGTTCGATTGATTGATAATCCTCAAGCTCATCATCAGAATCGAAGAAGGGCTTTTCAGTTGATCAGGGCTTGGGGTGAGTCACAGGATCTTGCTTATCTTCCTGTGTTTCGTCAAACTTATATGAATTTGAAAGGAAGGGATGAACCACTCGACATGGCAGGAGGAAATTCACCACCTGTTCCATATACCTTGGAGTCATACATACCTCAAGATCCTTTAGATCCCCCTGAAAGATACCCGATTCCTGAAGCAGGACTACATGCTATGGATGACCAAGCAGCTTTCTCTTCTAACCACCAACACATATCAATTGAAGAGAAGAAAGAGCATCTCGTGGTTGCTCGAAACAGTCTTGAATTGCTCTCTAGCATATTGAATTCTGAGGCAGAGCCAAAACCATTGAAGGAAGAAATAACACTGAGCTTGTTGGATAAGTGCAAGCAATCACTCTCTATCATCAGGGGGATTGTGGAAAGCACCTCAAATGATGATGTGACACTTTTTGAGGCTTTATATCTTAATGACGAGCTGCAACAGGTAATTTCCAAATATGAGGAGTTGGAAGCTGCTCAAAGGTCCGGGGCAGAACAAACTCAAAATGCTGACACTGCCAAGCATGATGTGGAAGCTGTTCAAAATCCCAATGAACAACTACCTGAAAGACGTGAAGGTGATGAATCTGAAGAGTCCAAAGCTGCTCAGAGTCTTGATCCAAAGCTACCCCAAAAGTTTGACAATCTTCAAGTCAATGCAACCGAGGGGGATGGTCATGTTGAAACCAAAATAGTGGATAGCACAAAAGAAGAGAAGAATGCTGAATCTAGCTTGAAGAGTAATACCGAATGA 1152 0.4262 MGRMVSDKMKEILQAPTPESKMVDDATLETLEEPNWGINMRICALINSEEFNGSEVVKAIKRKINHKSPVVQRLSLDLLEACAMNCDKVFSEVASEKVLDDMVRLIDNPQAHHQNRRRAFQLIRAWGESQDLAYLPVFRQTYMNLKGRDEPLDMAGGNSPPVPYTLESYIPQDPLDPPERYPIPEAGLHAMDDQAAFSSNHQHISIEEKKEHLVVARNSLELLSSILNSEAEPKPLKEEITLSLLDKCKQSLSIIRGIVESTSNDDVTLFEALYLNDELQQVISKYEELEAAQRSGAEQTQNADTAKHDVEAVQNPNEQLPERREGDESEESKAAQSLDPKLPQKFDNLQVNATEGDGHVETKIVDSTKEEKNAESSLKSNTE* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03103 383 Pfam VHS domain 20 129 IPR002014 GO:0035091|GO:0043130
Rops8g03103 383 Gene3D - 11 159 IPR008942 -
Rops8g03103 383 ProSiteProfiles VHS domain profile. 26 153 IPR002014 GO:0035091|GO:0043130
Rops8g03103 383 Gene3D - 206 305 IPR038425 -
Rops8g03103 383 MobiDBLite consensus disorder prediction 294 308 - -
Rops8g03103 383 MobiDBLite consensus disorder prediction 293 383 - -
Rops8g03103 383 CDD VHS 20 146 - -
Rops8g03103 383 SUPERFAMILY GAT-like domain 174 290 - -
Rops8g03103 383 MobiDBLite consensus disorder prediction 359 377 - -
Rops8g03103 383 SUPERFAMILY ENTH/VHS domain 15 148 IPR008942 -
Rops8g03103 383 Coils Coil 272 292 - -
Rops8g03103 383 SMART VHS_2 19 149 IPR002014 GO:0035091|GO:0043130
Rops8g03103 383 MobiDBLite consensus disorder prediction 318 335 - -
Rops8g03103 383 Pfam GAT domain 217 290 IPR004152 GO:0035091|GO:0043130
Rops8g03103 383 PANTHER TOM1-LIKE PROTEIN 1 4 370 IPR044836 GO:0035091|GO:0043130|GO:0043328
Rops8g03103 383 ProSiteProfiles GAT domain profile. 204 291 IPR004152 GO:0035091|GO:0043130
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03103 Rops-Chr8 68819057 68823227 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03103 - - gmx:100803803 593.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03103 8 68819057 68823227 Rops8g03103 8 68819057 68823227 ECH